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Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
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Biography
Carsen Stringer is a group leader at HHMI Janelia Research Campus. The lab develops algorithms for understanding large-scale neural activity. In addition, the lab works on general segmentation algorithms for cellular data, which enable fast and accurate processing of ~50,000 neuron recordings.
Here’s a biography of Carsen written by Daniela Cassataro for Stories of Women in Neuroscience (includes a podcast version). Carsen also talks about past and current work in this podcast with Paul Middlebrooks.
Learn more about the lab here: mouseland.github.io
Education
University College London | 2018
PhD Computational Neuroscience
Advisors: Kenneth Harris & Matteo Carandini
University of Pittsburgh | 2013
BSc Applied Math & Physics
Advisor: Jonathan Rubin
Teaching
(links to coding material)
- Deep Learning for Microscopy Image Analysis (lecturer), MBL Woodshole, 2022, 2023
- Imaging Structure & Function in the Nervous System (lecturer), CSHL, 2018, 2019, 2022, 2023
- CAJAL Course on Interacting with Neural Circuits (lecturer), Champalimaud, 2019, 2022, 2023
- Probabilistic Machine Learning Course (co-instructor), Janelia+JHU, 2022-2023
- Learning to use suite2p and kilosort2 (co-instructor), Janelia, 2019
- Neural Data Science (co-instructor) CSHL 2019
- Board of directors, Neuromatch Academy, 2021-2023
- Deep Learning for comp neuro (organizer/lecturer) + TA organizer Neuromatch Academy, 2020
- Mathematical methods for neuroscience and ML (co-organizer), Janelia, 2019
- Machine Learning: Dimensionality reduction, Janelia, 2018
- Theoretical Neuroscience TA, Gatsby, UCL, 2014
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