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Hideo Otsuna

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People / Hideo OtsunaScientific Computing Software
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Data Scientist
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The scientific result should come from quantitative analysis, not from the human eye and the self-decision. My specialty can convert any type of bio-image to a quantitative number. I am also the kind of person who loves the pursuit of the best visualization method. I am working between computer science and biology, for a better ensemble of biological software and biologists.

Web contents:

FluoRender: High quality 3D/4D reconstruction software for confocal microscope
http://www.fluorender.com. Designing of VVDviewer: https://tinyurl.com/y99tmn2t

Color depth MIP neuron search method from large amount of 3D data:
https://www.janelia.org/open-science/color-depth-mip

Drosophila 3D brain map
http://jfly.iam.u-tokyo.ac.jp/html/brainmap/

Paraffin slices 3D reconstruction
https://tinyurl.com/y6pd29gq

Automatic cell detection and analysis (algorithm skips detection of neurons)
https://tinyurl.com/yy8zw6r5

Automatic mitotic cell detection
https://tinyurl.com/y2g6daf3

Automatic signal intensity analysis along with elongated cells
https://tinyurl.com/yxrhwpuu

Automatic detection of focused signals from the compound microscopy images
https://tinyurl.com/yxh4ulk5

Light sheet microscopy 4D data visualization with auto brightness adjustment
https://tinyurl.com/y3qdyfkj

4D zebrafish eye development with mitotic cells counting
https://tinyurl.com/yyscgh9e

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