A community-developed Open-Source computational ecosystem for big neuro data.

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Nature Methods. 2018 Nov;15(11):846-7. doi: 10.1038/s41592-018-0181-1

A community-developed Open-Source computational ecosystem for big neuro data. Scientific Computing Software

Vogelstein JT, Perlman E, Falk B, Baden A, Roncal WG, Chandrashekhar V, Collman F, Seshamani S, Patsolic J, Lillaney K, Kazhdan M, Jr. R, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K

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Abstract

Big imaging data is becoming more prominent in brain sciences across spatiotemporal scales and phylogenies. We have developed a computational ecosystem that enables storage, visualization, and analysis of these data in the cloud, thusfar spanning 20+ publications and 100+ terabytes including nanoscale ultrastructure, microscale synaptogenetic diversity, and mesoscale whole brain connectivity, making NeuroData the largest and most diverse open repository of brain data.

PMID: 30377345 [PubMed - indexed for MEDLINE]

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Additional authors: Eric W. Bridgeford, Dean M. Kleissas, Daniel J. Tward, Ailey K. Crow, Matthew A. Wright, Michael I. Miller, Stephen J Smith, R. Jacob Vogelstein, Karl Deisseroth, and Randal Burns.

Published as a pre-print in arXiv (https://arxiv.org/abs/1804.02835) on April 9, 2018.

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A community-developed Open-Source computational ecosystem for big neuro data.

Abstract

PMID: 30377345 [PubMed - indexed for MEDLINE]

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