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Journal Article
Ahrens MB, Khakh BS, Poskanzer KE.  2024.  Astrocyte Calcium Signaling. Cold Spring Harb Perspect Biol.
Deemyad T, Lüthi J, Spruston N.  2018.  Astrocytes integrate and drive action potential firing in inhibitory subnetworks.. Nature Communications. 9(1):4336.
MacNamee SE, Liu KE, Gerhard S, Tran CT, Fetter RD, Cardona A, Tolbert LP, Oland LA.  2016.  Astrocytic glutamate transport regulates a Drosophila CNS synapse that lacks astrocyte ensheathment.. The Journal of Comparative Neurology. 524(10):1979-98.
Kural C, Akatay AAta, Gaudin R, Chen B-C, Legant WR, Betzig E, Kirchhausen T.  2015.  Asymmetric formation of coated pits on dorsal and ventral surfaces at the leading edge of motile cells and on protrusions of immobile cells.. Molecular Biology of the Cell. 26(11):2044-53.
Chen J, Mandel HB, Fitzgerald JE, Clark DA.  2019.  Asymmetric ON-OFF processing of visual motion cancels variability induced by the structure of natural scenes.. eLife. 8
Warrick JM, Morabito LM, Bilen J, Gordesky-Gold B, Faust LZ, Paulson HL, Bonini NM.  2005.  Ataxin-3 suppresses polyglutamine neurodegeneration in Drosophila by a ubiquitin-associated mechanism.. Molecular Cell. 18(1):37-48.
Heckscher ES, Long F, Layden MJ, Chuang C-H, Manning L, Richart J, Pearson JC, Crews ST, Peng H, Myers E et al..  2014.  Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience.. Development. 141(12):2524-32.
Ji N, Harris RA.  2006.  Atomic and molecular parity nonconservation and sum frequency generation solutions to the ozma problem.. The Journal of Physical Chemistry. 110:18744-7.
Settembre EC, Chen JZ, Dormitzer PR, Grigorieff N, Harrison SC.  2011.  Atomic model of an infectious rotavirus particle.. The EMBO Journal. 30(2):408-16.
Bartesaghi A, Aguerrebere C, Falconieri V, Banerjee S, Earl LA, Zhu X, Grigorieff N, Milne JLS, Sapiro G, Wu X et al..  2018.  Atomic resolution cryo-EM structure of β-galactosidase.. Structure (London, England : 1993). 26(6):848.
Liu S, Hattne J, Reyes FE, Sanchez-Martinez S, M de la Cruz J, Shi D, Gonen T.  2016.  Atomic resolution structure determination by the cryo-EM method MicroED.. Protein Science : a Publication of the Protein Society. 26(1):8-15.
Krotee P, Rodriguez JA, Sawaya MR, Cascio D, Reyes FE, Shi D, Hattne J, Nannenga BL, Oskarsson ME, Philipp S et al..  2017.  Atomic structures of fibrillar segments of hIAPP suggest tightly mated β-sheets are important for cytotoxicity.. eLife. 6
Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Z Zhou H, Eisenberg DS.  2018.  Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.. Nature Structural & Molecular Biology.
M de la Cruz J, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SKyung et al..  2017.  Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.. Nature Methods. 14(4):399-402.
Muenster S, Jain A, Mietke A, Pavlopoulos A, Grill SW, Tomancak P.  2019.  Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.. Nature.
Finkelstein A, Fontolan L, Economo MN, Li N, Romani S, Svoboda K.  2021.  Attractor dynamics gate cortical information flow during decision-making.. Nature Neuroscience. 24(6):843-50.
David AF, Roudot P, Legant WR, Betzig E, Danuser G, Gerlich DW.  2019.  Augmin accumulation on long-lived microtubules drives amplification and kinetochore-directed growth.. Journal of Cell Biology. 218(7):2150-68.
Bai X, Melesse M, Turpin CGSorensen, Sloan D, Chen C-Y, Wang W-C, Lee P-Y, Simmons JR, Nebenfuehr B, Mitchell D et al..  2020.  Aurora B functions at the apical surface after specialized cytokinesis during morphogenesis in C. elegans.. Development. 147(1):1-16.
Scheffer L.K, Karsh B, Vitaladevun S..  2013.  Automated alignment of imperfect EM images for neural reconstruction.. arXiv. :arXiv:1304.6034[q-bio.QM].
Yang Z, Ye C, Bogovic JA, Carass A, Jedynak BM, Ying SH, Prince JL.  2015.  Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.. NeuroImage. 127:435-44.
L Stapel C, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL.  2016.  Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos.. Development (Cambridge, England). 143(3):540-6.
Kreshuk A, Koethe U, Pax E, Bock DD, Hamprecht FA.  2014.  Automated detection of synapses in serial section transmission electron microscopy image stacks.. PloS one. 9:e87351.
Yu Y, Peng H.  2011.  Automated high speed stitching of large 3D microscopic images.. 2011 8TH IEEE International Symposium on Biomedical Imaging: From Nano to Macro. :238-41.
Dell AI, Bender JA, Branson K, Couzin ID, de Polavieja GG, Noldus LPJJ, Pérez-Escudero A, Perona P, Straw AD, Wikelski M et al..  2014.  Automated image-based tracking and its application in ecology.. Trends in Ecology and Evolution. 29(7):417-428.
Weissbrod A, Shapiro A, Vasserman G, Edry L, Dayan M, Yitzhaky A, Hertzberg L, Feinerman O, Kimchi T.  2013.  Automated long-term tracking and social behavioural phenotyping of animal colonies within a semi-natural environment.. Nature Communications. 4:2018.