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2024
Zhu RE, Diao X, Liu X, Ru Q, Wu Z, Zhang Z, Looger LL, Zhu J.  2024.  GESIAP3.0: Sensor-based Image Analysis Program for Transmission Visualization In Vivo. bioRxiv.
Grima LL, Guo Y, Narayan L, Hermundstad AM, Dudman JT.  2024.  A global dopaminergic learning rate enables adaptive foraging across many options. bioRxiv.
Troidl J, Knittel J, Li W, Zhan F, Pfister H, Turaga S.  2024.  Global Neuron Shape Reasoning with Point Affinity Transformers. bioRxiv.
Yaguchi K, Saito D, Menon T, Matsura A, Mizutani T, Kotani T, Nair S, Uehara R.  2024.  Haploidy-linked cell proliferation defects limit larval growth in Zebrafish. Open Biol.. 14(10):240126.
Hario S, Le GNT, Sugimoto H, Takahashi-Yamashiro K, Nishinami S, Toda H, Li S, Marvin JS, Kuroda S, Drobizhev M et al..  2024.  High-Performance Genetically Encoded Green Fluorescent Biosensors for Intracellular l-Lactate.. ACS Central Science. 10(2):402-416.
Bhattacharya S, Ettela A, Haydak J, Hobson CM, Stern A, Yoo M, Chew T-L, G Gusella L, Gallagher EJ, Hone JC et al..  2024.  A high-throughput microfabricated platform for rapid quantification of metastatic potential.. Sci Adv. 10(33):eadk0015.
Guerrero DKRangel, Balueva K, Barayeu U, Baracskay P, Gridchyn I, Nardin M, Roth CNina, Wulff P, Csicsvari J.  2024.  Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. Neuron.
Carrillo RA, Wang Y, Salazar R, Simonetta L, Sorrentino V, Gatton TJ, Wu B, Vecsey CG.  2024.  hkb is required for DIP-α expression and target recognition in the Drosophila neuromuscular circuit. Communications Biology. 7(507)
Xu C, Ramos TB, Rogers EM, Reiser MB, Doe CQ.  2024.  Homeodomain proteins hierarchically specify neuronal diversity and synaptic connectivity. eLife.
Yi B, Tanaka YL, Kosako H, Butlertanaka EP, Sengupta P, Lippincott-Schwartz J, Saito A, Yoshimura SH.  2024.  Host ZCCHC3 blocks HIV-1 infection and production by a dual mechanism. iScience.
Zouinkhi M, Rhoades JL, Weigel AV.  2024.  Hot-Distance: Combining One-Hot and Signed Distance Embeddings for Segmentation. arXiv. :2406.17936.
Boffi NM, Guo Y, Rycroft CH, Amir A.  2024.  How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution. eLife.
Hou K, Ge P, Sawaya MR, Dolinsky JL, Yang Y, Jiang YXiao, Lutter L, Boyer D, Cheng X, Pi J et al..  2024.  How short peptides can disassemble ultra‐stable tau fibrils extracted from Alzheimer’s disease brain by a strain‐relief mechanismAbstractBackgroundMethodResultConclusion. Alzheimer's & Dementia. 20(S6)
Christenson MP, Diez ASanz, Heath SL, Saavedra-Weisenhaus M, Adachi A, Nern A, Abbott LF, Behnia R.  2024.  Hue selectivity from recurrent circuitry in Drosophila. Nat Neurosci.
Marvin JS, Kokotos AC, Kumar M, Pulido C, Tkachuk AN, Yao JShuxin, Brown TA, Ryan TA.  2024.  iATPSnFR2: a high dynamic range fluorescent sensor for monitoring intracellular ATP. Proc Natl Acad Sci U S A.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae. bioRxiv.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.. Zebrafish.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Gmaz JM, Keller JA, Dudman JT, Gallego JA.  2024.  Integrating across behaviors and timescales to understand the neural control of movement.. Current Opinion in Neurobiology. 85:102843.
Hoang N, Sardaripour N, Ramey GD, Schilling K, Liao E, Chen Y, Park JHyun, Bledsoe X, Landman BA, Gamazon ER et al..  2024.  Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.. PLoS Biol. 22(9):e3002782.
Schneider MC, Hinterer F, Jesacher A, Schütz GJ.  2024.  Interactive simulation and visualization of point spread functions in single molecule imaging.. Optics Communications.
Coscia SM, Moore AS, Thompson CP, Tirrito CF, E Ostap M, Holzbaur ELF.  2024.  An interphase actin wave promotes mitochondrial content mixing and organelle homeostasis.. Nat Commun. 15(1):3793.
Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J et al..  2024.  IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer.. Cell.
Yang S, Heckmann J, Taha A, Gao S, Steinke S, Hust M, Prüß H, Furukawa H, Geis C, Heckmann M et al..  2024.  It only takes seconds for a human monoclonal autoantibody to inhibit N-methyl-D-aspartate receptors. bioRxiv.