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2024
Chai CM, Morrow C, Parikh DD, von Reyn CR, Leonardo A, Card GM.  2024.  A survival-critical role for Drosophila giant interneurons during predation. bioRxiv.
Bulumulla C, Walpita D, Iyer N, Eddison M, Patel R, Alcor D, Ackerman D, Beyene AG.  2024.  Synaptic Specializations at Dopamine Release Sites Orchestrate Efficient and Precise Neuromodulatory Signaling. bioRxiv.
Hadas R, Rubinstein H, Mittnenzweig M, Mayshar Y, Ben-Yair R, Cheng S, Aguilera-Castrejon A, Reines N, Orenbuch A-H, Lifshitz A et al..  2024.  Temporal BMP4 effects on mouse embryonic and extraembryonic developmentAbstract. Nature. 634(8034):652-661.
Hermundstad AM, Młynarski WF.  2024.  A theory of rapid behavioral inferences under the pressure of time. bioRxiv.
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2024.  Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM). bioRxiv.
Du F, Núñez-Ochoa MAngel, Pachitariu M, Stringer C.  2024.  Towards a simplified model of primary visual cortex. bioRxiv.
Pérez-Chávez I, Koberstein JN, Pueyo JMalo, Gilglioni EH, Vertommen D, Baeyens N, Ezeriņa D, Gurzov EN, Messens J.  2024.  Tracking fructose 1,6-bisphosphate dynamics in liver cancer cells using a fluorescent biosensor. iScience. 27:111336.
Stringer C, Pachitariu M.  2024.  Transformers do not outperform Cellpose. bioRxiv.
Kumar P, Gutu A, Waring A, Brown TA, Lavis LD, Tebo AG.  2024.  Transforming chemigenetic bimolecular fluorescence complementation systems into chemical dimerizers using chemistry.. bioRxiv.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Wiegel A, Team CM, H. Pasolli A, C. Xu S, Hess HF et al..  2024.  Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM. bioRxiv.
Chadwick SR, Stack-Couture S, Berg MD, Di Gregorio S, Lung B, Genereaux J, Moir RD, Brandl CJ, Willis IM, Snapp EL et al..  2024.  TUDCA modulates drug bioavailability to regulate resistance to acute ER stress in Saccharomyces cerevisiae. Mol Biol Cell. :mbcE24040147.
Kivimaki SE, Dempsey S, Tani JM, Camper C, Hicklin IK, Blaby-Haas CE, Brown AM, Melville S.  2024.  Type IV pili-associated secretion of a biofilm matrix protein from Clostridium perfringens that forms intermolecular isopeptide bonds. bioRxiv.
Ye Z, Shelton AM, Shaker JR, Boussard JM, Colonell J, Birman D, Manavi S, Chen S, Windolf C, Hurwitz C et al..  2024.  Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings. bioRxiv.
Ott CM, Torres R, Kuan T-S, Kuan A, Buchanan JA, Elabbady L, Seshamani S, Bodor AL, Collman F, Bock DD et al..  2024.  Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex. Curr Biol.
Aggarwal A, Chan J, Waring AK, Negrean A, Marvin JS, Podgorski K, Looger LL.  2024.  Visualization of Glutamatergic Neurotransmission in Diverse Model Organisms with Genetically Encoded Indicators. New Technologies for Glutamate Interaction: Neurons and Glia. 2780:3–34.
Kawashima T, Wei Z, Haruvi R, Shainer I, Narayan S, Baier H, Ahrens MB.  2024.  Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning. bioRxiv.
Vaxenburg R, Siwanowicz I, Merel J, Robie AA, Morrow C, Novati G, Stefanidi Z, Both G-J, Card GM, Reiser MB et al..  2024.  Whole-body simulation of realistic fruit fly locomotion with deep reinforcement learning. bioRxiv.
Wang Q, Cardona A, Zlatic M, Vogelstein JT, Priebe CE.  2024.  Why do we have so many excitatory neurons? bioRxiv.
Lin H-T, Siwanowicz I, Leonardo A.  2024.  Wireless recordings from dragonfly target detecting neurons during prey interception flight. bioRxiv.
Hao S, Lee YJin, Goldfajn NBenhamou, Flores E, Liang J, Fuehrer H, Demmerle J, Lippincott-Schwartz J, Liu Z, Sukenik S et al..  2024.  YAP condensates are highly organized hubs. iScience. :109927.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.. Nano Lett.
Desissaire S, Ziemczonok M, Cantat-Moltrecht T, Kuś A, Godefroy G, Hervé L, Paviolo C, Krauze W, Allier C, Mandula O et al..  2025.  Bio-inspired 3D-printed phantom: Encoding cellular heterogeneity for characterization of quantitative phase imaging. Measurement. 247:116765.
Galbraith CG, English BP, Boehm U, Galbraith J.  2025.  BPS2025 - Local cytoplasmic tradewinds direct soluble proteins to their targets. Biophysical Journal. 124(3):375a-376a.