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- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
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- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
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- Primary & iPS Cell Culture
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] 2023
Abdelfattah AS, Zheng J, Singh A, Huang Y-C, Reep D, Tsegaye G, Tsang A, Arthur BJ, Rehorova M, Olson CVL et al..
2023. Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Neuron. 111(10):1547-1563.
Espinosa-Medina I, Feliciano D, Belmonte-Mateos C, Miyares RLinda, Garcia-Marques J, Foster B, Lindo S, Pujades C, Koyama M, Lee T.
2023. TEMPO enables sequential genetic labeling and manipulation of vertebrate cell lineages.. Neuron. 111(3):345-361.e10.
2022
2021
2020
Borden P, Zhang P, Shivange AV, Marvin JS, Cichon J, Dan C, Podgorski K, Figueiredo A, Novak O, Tanimoto M et al..
2020. A fast genetically encoded fluorescent sensor for faithful in vivo acetylcholine detection in mice, fish, worms and flies.. bioRxiv.
Abdelfattah AS, Valenti R, Zheng J, Wong A, Podgorski K, Koyama M, Kim DS, Schreiter ER, GENIE PTeam.
2020. A general approach to engineer positive-going eFRET voltage indicators. Nature Communications. 11(1)
McRaven C, Tanese D, Zhang L, Yang C-T, Ahrens MB, Emiliani V, Koyama M.
2020. High-throughput cellular-resolution synaptic connectivity mapping in vivo with concurrent two-photon optogenetics and volumetric Ca2+ imaging. bioRxiv.
Garcia-Marques J, Espinosa Medina I, Ku K-Y, Yang C-P, Koyama M, Yu H-H, Lee T.
2020. A programmable sequence of reporters for lineage analysis.. Nature Neuroscience. 23(12):1618-28.
Binns TC, Ayala AX, Grimm JB, Tkachuk AN, Castillon GA, Phan S, Zhang L, Brown TA, Liu Z, Adams SR et al..
2020. Rational design of bioavailable photosensitizers for manipulation and imaging of biological systems.. Cell Chemical Biology. 27(8):1063-72.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..
2019. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Pujala A, Koyama M.
2019. Chronology-based architecture of descending circuits that underlie the development of locomotor repertoire after birth.. eLife. 8
Garcia-Marques J, Yang C-P, Espinosa Medina I, Koyama M, Lee T.
2019. CLADES: a programmable sequence of reporters for lineage analysis. bioRxiv.
Turcotte R, Liang Y, Tanimoto M, Zhang Q, Li Z, Koyama M, Betzig E, Ji N.
2019. Dynamic super-resolution structured illumination imaging in the living brain.. Proceedings of the National Academy of Sciences of the United States of America. 116(19):9586-91.
Keller JP, Marvin JS, Lacin H, Lemon WC, Shea J, Kim S, Lee RT, Koyama M, Keller PJ, Looger LL.
2019. In vivo glucose imaging in multiple model organisms with an engineered single-wavelength sensor.. bioRxiv.
Wan Y, Wei Z, Looger LL, Koyama M, Druckmann S, Keller PJ.
2019. Single-cell reconstruction of emerging population activity in an entire developing circuit.. Cell. 179(2)
Garcia-Marques J, Yang C-P, Espinosa Medina I, Mok K, Koyama M, Lee T.
2019. Unlimited genetic switches for cell-type-specific manipulation.. Neuron. 104(2):227-38.
2018
Lu R, Tanimoto M, Koyama M, Na J.
2018. 50 Hz volumetric functional imaging with continuously adjustable depth of focus.. Biomedical Optics Express. 9(4):1964-76.
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..
2018. Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
Shen Y, Dana H, Abdelfattah AS, Patel R, Shea J, Molina RS, Rawal B, Rancic V, Chang Y-F, Wu L et al..
2018. A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.. BMC Biology. 16(1):9.
Koyama M, Pujala A.
2018. Mutual inhibition of lateral inhibition: a network motif for an elementary computation in the brain.. Current Opinion in Neurobiology. 49:69-74.
Liu T-L, Upadhyayula S, Milkie DE, Singh V, Wang K, Swinburne IA, Mosaliganti KR, Collins ZM, Hiscock TW, Shea J et al..
2018. Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms.. Science (New York, N.Y.). 360(6386)
2017
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..
2017. Stochastic protein labeling enables long-term single molecule observation in vivo.. bioRxiv.
Lu R, Sun W, Liang Y, Kerlin A, Bierfeld J, Seelig JD, Wilson DE, Scholl B, Mohar B, Tanimoto M et al..
2017. Video-rate volumetric functional imaging of the brain at synaptic resolution.. Nature Neuroscience. 20(4):620-8.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..
2017. Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling.. Proceedings of the National Academy of Sciences of the United States of America. 115(2):343-8.