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Author Title Type [ Year(Desc)]
Filters: Author is Preibisch, Stephan  [Clear All Filters]
2008
Preibisch S, Saalfeld S, Tomancak P.  2008.  Fast stitching of large 3d biological datasets.. Proceedings of the ImageJ User and Developer Conference.
2009
Preibisch S, Saalfeld S, Rohlfing T, Tomancak P.  2009.  Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.. Medical Imaging 2009: Image Processing. 7259:72592S.
Preibisch S, Saalfeld S, Tomancak P.  2009.  Globally optimal stitching of tiled 3D microscopic image acquisitions.. Bioinformatics. 25(11):1463-5.
2010
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V..  2010.  An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.. PLoS Biology. 8(10)
Preibisch S, Tomancak P, Saalfeld S.  2010.  Into ImgLib—Generic image processing in Java. Proceedings of the ImageJ User and Developer Conference.
Preibisch S, Saalfeld S, Schindelin J, Tomancak P.  2010.  Software for bead-based registration of selective plane illumination microscopy data.. Nature Methods. 7(6):418-9.
2012
Pietzsch T, Preibisch S, Tomancak P, Saalfeld S.  2012.  Advanced Programming with ImgLib2. Proceedings of the ImageJ User and Developer Conference.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B et al..  2012.  Fiji: an open-source platform for biological-image analysis.. Nature Methods. 9(7):676-82.
Pietzsch T, Preibisch S, Tomancak P, Saalfeld S.  2012.  ImgLib2--generic image processing in Java.. Bioinformatics. 28(22):3009-11.
Saalfeld S, Pietzsch T, Tomancak P, Preibisch S.  2012.  ImgLib2—Generic Image Processing in Java. ImageJ User and Developer Conference.
Preibisch S, Pietzsch T, Myers E, Tomancak P, Saalfeld S.  2012.  Introduction to ImgLib2. Proceedings of the ImageJ User and Developer Conference.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7:e38011.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
2014
Jug F, Pietzsch T, Preibisch S, Tomancak P.  2014.  Bioimage informatics in the context of Drosophila research.. Methods. 68(1):60-73.
Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P.  2014.  Efficient Bayesian-based multiview deconvolution.. Nature Methods. 11:645-8.
2015
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P.  2015.  BigDataViewer: visualization and processing for large image data sets.. Nature Methods. 12(6):481-3.
Smith CS, Preibisch S, Joseph A, Abrahamsson S, Rieger B, Myers E, Singer RH, Grunwald D.  2015.  Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.. Journal of Cell Biology. 209(4):609-19.
2017
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
2018
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..  2018.  Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
2019
Hörl D, Rusak FRojas, Preusser F, Tillberg P, Randel N, Chhetri RK, Cardona A, Keller PJ, Harz H, Leonhardt H et al..  2019.  BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.. Nature Methods. 16(9):870-74.
2021
Preusser F, Santos NDos, Contzen J, Stachelscheid H, Costa ÉTosoni, Mergenthaler P, Preibisch S.  2021.  FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.. Bioinformatics. 37(18):3088-3090.
Stelzer EHK, Strobl F, Chang B-J, Preusser F, Preibisch S, McDole K, Fiolka R.  2021.  Light sheet fluorescence microscopy.. Nature Reviews Methods Primers. 1(1)
2022
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2022.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology.
Nielsen AF, Bindereif A, Bozzoni I, Hanan M, Hansen TB, Irimia M, Kadener S, Kristensen LS, Legnini I, Morlando M et al..  2022.  Best practice standards for circular RNA research. Nature Methods. 19(10):1208-1220.
Gandin V, English BP, Freeman M, Leroux L-P, Preibisch S, Walpita D, Jaramillo M, Singer RH.  2022.  Cap-dependent translation initiation monitored in living cells.. Nature Communications. 13(1):6558.