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2010
Jenett A, Wolff T, Nern A., Pfeiffer BD, Ngo T., Murphy C., Long F., Peng H., Rubin GM.  2010.  Anatomic analysis of Gal4 expression patterns of the Rubin line collection: the central complex.. Journal of Neurogenetics. 24:71-2.
2000
Rubin GM, Yandell MD, Wortman JR, Miklos GLGabor, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W et al..  2000.  Comparative genomics of the eukaryotes.. Science. 287(5461):2204-15.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al..  2000.  The genome sequence of Drosophila melanogaster.. Science. 287(5461):2185-95.
Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, Reinert KH, Remington KA et al..  2000.  A whole-genome assembly of Drosophila.. Science. 287(5461):2196-204.
1999
Spradling AC, Stern D, Beaton A, Rhem EJ, Laverty T, Mozden N, Misra S, Rubin GM.  1999.  The Berkeley Drosophila genome project gene disruption project: single P-element insertions mutating 25% of vital Drosophila genes.. Genetics. 153(1):135-77.
1998
Rubin GM.  1998.  The Drosophila genome project: a progress report.. Trends in Genetics. 14(9):340-3.
1997
Treisman JE, Luk A, Rubin GM, Heberlein U.  1997.  eyelid antagonizes wingless signaling during Drosophila development and has homology to the Bright family of DNA-binding proteins.. Genes & Development. 11(15):1949-62.
1995
Hay BA, Wassarman DA, Rubin GM.  1995.  Drosophila homologs of baculovirus inhibitor of apoptosis proteins function to block cell death.. Cell. 83(7):1253-62.
Rebay I, Rubin GM.  1995.  Yan functions as a general inhibitor of differentiation and is negatively regulated by activation of the Ras1/MAPK pathway.. Cell. 81(6):857-66.
1994
O’Neill EM, Rebay I, Tjian R, Rubin GM.  1994.  The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway.. Cell. 78(1):137-47.
Neufeld TP, Rubin GM.  1994.  The Drosophila peanut gene is required for cytokinesis and encodes a protein similar to yeast putative bud neck filament proteins.. Cell. 77(3):371-9.
1993
Xu T, Rubin GM.  1993.  Analysis of genetic mosaics in developing and adult Drosophila tissues.. Development. 117(4):1223-37.
Heberlein U, Wolff T, Rubin GM.  1993.  The TGF beta homolog dpp and the segment polarity gene hedgehog are required for propagation of a morphogenetic wave in the Drosophila retina.. Cell. 75(5):913-26.
1992
Freeman M, Klämbt C, Goodman CS, Rubin GM.  1992.  The argos gene encodes a diffusible factor that regulates cell fate decisions in the Drosophila eye.. Cell. 69(6):963-75.
1991
Fortini ME, Rubin GM.  1991.  The optic lobe projection pattern of polarization-sensitive photoreceptor cells in Drosophila melanogaster.. Cell and Tissue Research. 265(1):185-91.
Simon MA, Bowtell DD, Dodson GS, Laverty TR, Rubin GM.  1991.  Ras1 and a putative guanine nucleotide exchange factor perform crucial steps in signaling by the sevenless protein tyrosine kinase.. Cell. 67(4):701-16.
1990
Fortini ME, Rubin GM.  1990.  Analysis of cis-acting requirements of the Rh3 and Rh4 genes reveals a bipartite organization to rhodopsin promoters in Drosophila melanogaster.. Genes & Development. 4(3):444-63.
Kimmel BE, Heberlein U, Rubin GM.  1990.  The homeo domain protein rough is expressed in a subset of cells in the developing Drosophila eye where it can specify photoreceptor cell subtype.. Genes & Development. 4(5):712-27.
Baker NE, Mlodzik M, Rubin GM.  1990.  Spacing differentiation in the developing Drosophila eye: a fibrinogen-related lateral inhibitor encoded by scabrous.. Science. 250(4986):1370-7.
1989
Moses K, Ellis MC, Rubin GM.  1989.  The glass gene encodes a zinc-finger protein required by Drosophila photoreceptor cells.. Nature. 340(6234):531-6.
Montell C, Rubin GM.  1989.  Molecular characterization of the Drosophila trp locus: a putative integral membrane protein required for phototransduction.. Neuron. 2(4):1313-23.
1987
Tomlinson A, Bowtell DD, Hafen E, Rubin GM.  1987.  Localization of the sevenless protein, a putative receptor for positional information, in the eye imaginal disc of Drosophila.. Cell. 51(1):143-50.
Hafen E, Basler K, Edstroem JE, Rubin GM.  1987.  Sevenless, a cell-specific homeotic gene of Drosophila, encodes a putative transmembrane receptor with a tyrosine kinase domain.. Science. 236(4797):55-63.
1986
Laski FA, Rio DC, Rubin GM.  1986.  Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing.. Cell. 44(1):7-19.
1985
Zuker CS, Cowman AF, Rubin GM.  1985.  Isolation and structure of a rhodopsin gene from D. melanogaster.. Cell. 40(4):851-8.