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Main Menu - Block
Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
2025
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.
2025. Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..
2025. Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
2024
Ahrens MB, Khakh BS, Poskanzer KE.
2024. Astrocyte Calcium Signaling. Cold Spring Harb Perspect Biol.
Ahrens MB.
2024. Closing the Experiment-Modeling-Perturbation Loop in Whole-Brain Neuroscience.. Neurosci Bull.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.
2024. Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol.
2023
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..
2023. Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Nanda A, Johnson GW, Mu Y, Ahrens MB, Chang C, Englot DJ, Breakspear M, Rubinov M.
2023. Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena.. Cell Reports. 42(4):112254.
2022
Böhm UL, Kimura Y, Kawashima T, Ahrens MB, Higashijima S-I, Engert F, Cohen AE.
2022. Voltage imaging identifies spinal circuits that modulate locomotor adaptation in zebrafish.. Neuron.
Böhm UL, Kimura Y, Kawashima T, Ahrens MB, Higashijima S-I, Engert F, Cohen AE.
2022. Voltage imaging identifies spinal circuits that modulate locomotor adaptation in zebrafish.. Neuron. 110(7):1211-1222.e4.
2021
2020
Mu Y, Narayan S, Mensh BD, Ahrens MB.
2020. Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish.. Current Opinion in Neurobiology. 64:151-160.
Zarowny L, Aggarwal A, Rutten VMS, Kolb I, Patel R, Huang H-Y, Chang Y-F, Phan T, Kanyo R, Ahrens MB et al..
2020. Bright and high-performance genetically encoded Ca indicator based on mNeonGreen fluorescent protein.. ACS Sensors.
McRaven C, Tanese D, Zhang L, Yang C-T, Ahrens MB, Emiliani V, Koyama M.
2020. High-throughput cellular-resolution synaptic connectivity mapping in vivo with concurrent two-photon optogenetics and volumetric Ca2+ imaging. bioRxiv.
Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OTunc, Gritton HJ, Romano MF, Gao R, Yu C-CJay, Tseng H-A et al..
2020. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.. Neuron. 107(3):470.
2019
Wee CLei, Song EYue, Johnson REvan, Ailani D, Randlett O, Kim J-Y, Nikitchenko M, Bahl A, Yang C-T, Ahrens MB et al..
2019. A bidirectional network for appetite control in larval zebrafish.. Elife. 8
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..
2019. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Marvin JS, Shimoda Y, Magloire V, Leite M, Kawashima T, Jensen TP, Kolb I, Knott EL, Novak O, Podgorski K et al..
2019. A genetically encoded fluorescent sensor for in vivo imaging of GABA.. Nature Methods. 16(8):763-770.
Mu Y, Bennett DV, Rubinov M, Narayan S, Yang C-T, Tanimoto M, Mensh BD, Looger LL, Ahrens MB.
2019. Glia accumulate evidence that actions are futile and suppress unsuccessful behavior.. Cell. 178(1):27-43.
Ahrens MB.
2019. Zebrafish neuroscience: Using artificial neural networks to help understand brains.. Current Biology. 29(21):R1138-R1140.
2018
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..
2018. Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
Chen X, Mu Y, Hu Y, Kuan AT, Nikitchenko M, Randlett O, Chen AB, Gavornik JP, Sompolinsky H, Engert F et al..
2018. Brain-wide organization of neuronal activity and convergent sensorimotor transformations in larval zebrafish.. Neuron. 100(4):876-890.e5.
Vanwalleghem GC, Ahrens MB, Scott EK.
2018. Integrative whole-brain neuroscience in larval zebrafish.. Current Opinion in Neurobiology. 50:136-145.
Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk H-J, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N et al..
2018. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.. Nature Chemical Biology.