Main Menu (Mobile)- Block
MENU
- Our Research
-
Support Teams
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
- Open Science
- You + Janelia
- About Us
Labs:
Project Teams:
Main Menu - Block
Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
] O
O’Leary TP, Kendrick RM, Bristow BN, Sullivan KE, Wang L, Clements J, Lemire AL, Cembrowski MS.
2022. Neuronal cell types, projections, and spatial organization of the central amygdala. iScience. 25(12):105497.
O’Neill EM, Rebay I, Tjian R, Rubin GM.
1994. The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway.. Cell. 78(1):137-47.
O’Shaughnessy EC, Stone OJ, LaFosse PK, Azoitei ML, Tsygankov D, Heddleston JM, Legant WR, Wittchen ES, Burridge K, Elston TC et al..
2019. Software for lattice light-sheet imaging of FRET biosensors, illustrated with a new Rap1 biosensor.. The Journal of Cell Biology. 218(9):3153-3160.
P
Pachitariu M, Sridhar S, Pennington J, Stringer C.
2024. Spike sorting with Kilosort4. Nat Methods.
Pachitariu M, Steinmetz NA, Kadir SN, Carandini M, Harris KD.
2016. Fast and accurate spike sorting of high-channel count probes with KiloSort.. Neural Information Processing Systems (NIPS 2016).
Pachitariu M, Sahani M.
2017. Visual motion computation in recurrent neural networks.. bioRxiv. :099101.
Pachitariu M, Sahani M.
2012. Learning visual motion in recurrent neural networks.. Neural Information Processing Systems (NIPS 2012).
Pachitariu M, Lyamzin DR, Sahani M, Lesica NA.
2015. State-dependent population coding in primary auditory cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 35(5):2058-73.
Pachitariu M, Sridhar S, Stringer C.
2023. Solving the spike sorting problem with Kilosort. bioRxiv.
Pachitariu M, Stringer C, Harris KD.
2017. Robustness of spike deconvolution for calcium imaging of neural spiking.. bioRxiv. :156786.
Pachitariu M, Packer AM, Pettit N, Dalgleish H, Häusser M, Sahani M.
2013. Extracting regions of interest from biological images with convolutional sparse block coding.. Neural Information Processing Systems (NIPS 2013).
Pachitariu M, Stringer C.
2022. Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
Pachitariu M, Stringer C, Harris KD.
2018. Robustness of spike deconvolution for neuronal calcium imaging.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(37):7976-85.
Pachitariu M, Sahani M.
2013. Regularization and nonlinearities for neural language models: when are they needed? arXiv. :arXiv:1301.5650.
Pachitariu M, Petreska B, Sahani M.
2013. Recurrent linear models of simultaneously-recorded neural populations.. Neural Information Processing Systems (NIPS 2013).
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.
2017. Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.
Pacifico R, Dewan A, Cawley D, Guo C, Bozza T.
2012. An olfactory subsystem that mediates high-sensitivity detection of volatile amines.. Cell Rep. 2(1):76-88.
Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J et al..
2018. The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion.. Nature Communications. 9(1):2980.
Paez-Segala M, Wang Y, Iyer N, Li W-P, Rivlin P, Looger L.
2020. Optimization of Fluorescent Proteins and Techniques for In-resin Correlative Light and Electron Microscopy. Microscopy and Microanalysis. 26:1036–1039.
Paez-Segala MG, Sun MG, Shtengel G, Viswanathan S, Baird MA, Macklin JJ, Patel R, Allen JR, Howe ES, Piszczek G et al..
2015. Fixation-resistant photoactivatable fluorescent proteins for CLEM.. Nature Methods. 12(3):215-8.
Paez-Segala MG, Wang Y, Iyer N, Li W-P, Rivlin PK, Looger LL.
2018. Development and Applications of Fluorescent Proteins for Correlative Light and Electron Microscopy. Microscopy and Microanalysis. 24(S1):2318-2319.
Pais R., Duttaroy A., Wolever J., Dobbs M., Pastalkova E.
2012. Implantable blood pressure monitoring cuff for small laboratory animal.. Microsystems for Measurement and Instrumentation (MAMNA), 2012.
Pak AJ, Grime JMA, Sengupta P, Chen AK, Durumeric AEP, Srivastava A, Yeager M, Briggs JAG, Lippincott-Schwartz J, Voth GA.
2017. Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane.. Proceedings of the National Academy of Sciences of the United States of America. 114(47):E10056-65.
Paksa A, Bandemer J, Höckendorf B, Razin N, Tarbashevich K, Minina S, Meyen D, Gov NS, Keller PJ, Raz E.
2016. Repulsive cues combined with physical barriers and cell–cell adhesion determine progenitor cell positioning during organogenesis. Nature Communications. 7:11288.
Palavicino-Maggio CB, Chan Y-B, McKellar C, Kravitz EA.
2019. A small number of cholinergic neurons mediate hyperaggression in female Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 116(34):17029-38.