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Meissner GW, Grimm JB, Johnston RM, Sutcliffe B, Ng J, Jefferis GSXE, Cachero S, Lavis LD, Malkesman O.  2018.  Optimization of fluorophores for chemical tagging and immunohistochemistry of Drosophila neurons.. PLoS One. 13(8):e0200759.
Port F, Chen H-M, Lee T, Bullock SL.  2014.  Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 111(29):E2967-76.
Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI et al..  2013.  An optimized fluorescent probe for visualizing glutamate neurotransmission.. Nature Methods. 10:162-70.
Thestrup T, Litzlbauer J, Bartholomäus I, Mues M, Russo L, Dana H, Kovalchuk Y, Liang Y, Kalamakis G, Laukat Y et al..  2014.  Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.. Nature Methods. 11(2):175-82.
Grimm JB, Tkachuk AN, Patel R, S. Hennigan T, Gutu A, Dong P, Gandin V, Osowski AM, Holland KL, Liu ZJ et al..  2023.  Optimized Red-Absorbing Dyes for Imaging and Sensing. Journal of the American Chemical Society.
Nern A, Pfeiffer BD, Rubin GM.  2015.  Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system.. Proceedings of the National Academy of Sciences of the United States of America. 112(22):E2967-76.
Benedetti L, Marvin JS, Falahati H, Guillén-Samander A, Looger LL, De Camilli P.  2020.  Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells.. Elife. 9
Romani S, Amit DJ, Amit Y.  2008.  Optimizing one-shot learning with binary synapses.. Neural Computation. 20(8):1928-50.
Priebe C.E, Vogelstein J., Bock D..  2013.  Optimizing the quantity/quality trade-off in connectome inference.. Communications in Statistics-Theory and Methods. 42:3455-62.
Husson SJ, Costa WSteuer, Wabnig S, Stirman JN, Watson JD, W Spencer C, Akerboom J, Looger LL, Treinin M, Miller DM et al..  2012.  Optogenetic analysis of a nociceptor neuron and network reveals ion channels acting downstream of primary sensors.. Current Biology. 22(9):743-52.
Zhang W, Lohman AW, Zhuravlova Y, Lu X, Wiens MD, Hoi H, Yaganoglu S, Mohr MA, Kitova EN, Klassen JS et al..  2017.  Optogenetic control with a photocleavable protein, PhoCl.. Nature Methods. 14(4):391-394.
Cande J, Namiki S, Qiu J, Korff W, Card GM, Shaevitz JW, Stern DL, Berman GJ.  2018.  Optogenetic dissection of descending behavioral control in Drosophila.. eLife. :e34275.
Benedetti L.  2021.  Optogenetic Tools for Manipulating Protein Subcellular Localization and Intracellular Signaling at Organelle Contact Sites. Current Protocols. 1(3)
Looger LL, Segala MGPaez.  2021.  Optogenetics. Molecular Imaging: Principles and Practice, 2nd Edition.
Adamantidis A, Arber S, Bains JS, Bamberg E, Bonci A, Buzsáki G, Cardin JA, Costa RM, Dan Y, Goda Y et al..  2015.  Optogenetics: 10 years after ChR2 in neurons-views from the community.. Nature Neuroscience. 18(9):1202-12.
Portugues R, Severi KE, Wyart C, Ahrens MB.  2013.  Optogenetics in a transparent animal: circuit function in the larval zebrafish.. Current Opinion in Neurobiology. 23(1):119-26.
Cao ZFang Huang, Burdakov D, Sarnyai Z.  2011.  Optogenetics: potentials for addiction research.. Addiction Biology. 16(4):519-31.
Ruiz O, Lustig BR, Nassi JJ, Cetin A, Reynolds JH, Albright TD, Callaway EM, Stoner GR, Roe AW.  2013.  Optogenetics through windows on the brain in the nonhuman primate.. Journal of neurophysiology. 110(6):1455-67.
Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S.  2019.  An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability.. Nature Communications. 10(1):216.
Yu Y, Gao SM, Guan Y, Hu P-W, Zhang Q, Liu J, Jing B, Zhao Q, Sabatini DM, Abu-Remaileh M et al..  2024.  Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevity. eLife.
Pouchelon G, Dwivedi D, Bollmann Y, Agba CK, Xu Q, Mirow AMC, Kim S, Qiu Y, Sevier E, Ritola KD et al..  2021.  The organization and development of cortical interneuron presynaptic circuits are area specific.. Cell Reports. 37(6):109993.
Edwards TN, Nuschke AC, Nern A, Meinertzhagen IA.  2012.  Organization and metamorphosis of glia in the Drosophila visual system.. The Journal of Comparative Neurology. 520(10):2067-85.
Awasaki T, Lai S-L, Ito K, Lee T.  2008.  Organization and postembryonic development of glial cells in the adult central brain of Drosophila.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 28(51):13742-53.
Cheong HSJ, Boone KN, Bennett MM, Salman F, Ralston JD, Hatch K, Allen RF, Phelps AM, Cook AP, Phelps JS et al..  2023.  Organization of an Ascending Circuit that Conveys Flight Motor State. bioRxiv.
Cheong HSJ, Boone KN, Bennett MM, Salman F, Ralston JD, Hatch K, Allen RF, Phelps AM, Cook AP, Phelps JS et al..  2024.  Organization of an ascending circuit that conveys flight motor state in Drosophila.. Current Biology.