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Pietzsch T, Saalfeld S, Preibisch S, Tomancak P.  2015.  BigDataViewer: visualization and processing for large image data sets.. Nature Methods. 12(6):481-3.
Pietzsch T, Preibisch S, Tomancak P, Saalfeld S.  2012.  ImgLib2--generic image processing in Java.. Bioinformatics. 28(22):3009-11.
Pindolia K, Jordan M, Guo C, Matthews N, Mock DM, Strovel E, Blitzer M, Wolf B.  2011.  Development and characterization of a mouse with profound biotinidase deficiency: a biotin-responsive neurocutaneous disorder.. Molecular Genetics and Metabolism. 102(2):161-9.
Pinto L, Koay SA, Engelhard B, Yoon AM, Deverett B, Thiberge SY, Witten IB, Tank DW, Brody CD.  2018.  An Accumulation-of-Evidence Task Using Visual Pulses for Mice Navigating in Virtual Reality. Frontiers in Behavioral Neuroscience. 12
Pitsawong W, Pádua RAP, Grant T, Hoemberger M, Otten R, Bradshaw N, Grigorieff N, Kern D.  2023.  From primordial clocks to circadian oscillators. Nature.
Planchon TA, Gao L, Milkie DE, Davidson MW, Galbraith JA, Galbraith CG, Betzig E.  2011.  Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination. (With commentary). Nature Methods. 8(5):417-23.
Planchon TA, Gao L, Milkie DE, Davidson MW, Galbraith JA, Galbraith CG, Betzig E.  2011.  Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination.. Nature Methods. 8(5):417-23.
Plaza SM, Markov IL.  2015.  Solving the third-shift problem in ic piracy with test-aware logic locking.. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 34(6):961-71.
Plaza SM, Clements J, Dolafi T, Umayam L, Neubarth NN, Scheffer LK, Berg S.  2022.  neuPrint: An open access tool for EM connectomics.. Frontiers in Neuroinformatics. 16:896292.
Plaza SM, Zhao T.  2014.  Automatic neuron type identification by neurite localization in the Drosophila medulla.. arXiv. :arXiv:1409.1892[q-bio.NC].
Plaza SM, Scheffer LK, Chklovskii DB.  2014.  Toward large-scale connectome reconstructions.. Current Opinion in Neurobiology. 25C:201-10.
Plaza SM, Berg SE.  2016.  Large-scale electron microscopy image segmentation in spark.. arXiv. :arXiv:1604.00385.
Plaza SM, Parag T, Huang G, Olbris DJ, Saunders MA, Rivlin PK.  2014.  Annotating synapses in large EM datasets.. arXiv. :arXiv:1409.1801[q-bio.QM].
Plaza SM, Scheffer LK, Saunders M.  2012.  Minimizing manual image segmentation turn-around time for neuronal reconstruction by embracing uncertainty.. PLoS One. 7:e44448.
Plaza SM, Markov IL.  2014.  Protecting integrated circuits from piracy with test-aware logic locking.. ICCAD '14 Proceedings of the 2014 IEEE/ACM International Conference on Computer-Aided Design. :262-269.
Plaza SM, Funke J.  2018.  Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
Plaza SM.  2014.  Focused proofreading: efficiently extracting connectomes from segmented EM images.. arXiv. :arXiv:1409.1199[q-bio.QM].
Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W et al..  2016.  Simultaneous denoising, deconvolution, and demixing of calcium imaging data.. Neuron. 89(2):285-99.
Podgorski K, Ranganathan GNattar.  2016.  Brain heating induced by near infrared lasers during multi-photon microscopy.. Journal of Neurophysiology. 116(3):1012-23.
Poeck B, Triphan T, Neuser K, Strauss R.  2008.  Locomotor control by the central complex in Drosophila-an analysis of the tay bridge mutant.. Developmental Neurobiology. 68(8):1046-58.
Pogodalla N, Kranenburg H, Rey S, Rodrigues S, Cardona A, Klämbt C.  2021.  Drosophila ß-Spectrin is required in polarized ensheathing glia that form a diffusion-barrier around the neuropil.. Nature Communications. 12(1):6357.
Polilov AA, Makarova AA, Pang S, C Xu S, Hess H.  2021.  Protocol for preparation of heterogeneous biological samples for 3D electron microscopy: a case study for insects.. Scientific Reports. 11(1):4717.
Ponomarev I, Maiya R, Harnett MT, Schafer GL, Ryabinin AE, Blednov YA, Morikawa H, Boehm SL, Homanics GE, Berman AE et al..  2006.  Transcriptional signatures of cellular plasticity in mice lacking the alpha1 subunit of GABAA receptors.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 26(21):5673-83.
Poort J, Khan AG, Pachitariu M, Nemri A, Orsolic I, Krupic J, Bauza M, Sahani M, Keller GB, Mrsic-Flogel TD et al..  2015.  Learning enhances sensory and multiple non-sensory representations in primary visual cortex.. Neuron. 86(6):1478-90.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.