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Ji X, Ferreira T, Friedman B, Liu R, Liechty H, Bas E, Chandrashekar J, Kleinfeld D.  2021.  Brain microvasculature has a common topology with local differences in geometry that match metabolic load.. Neuron. 109(7):1168.
Li Q, Gao Y, Li H, Liu H, Wang D, Pan W, Liu S, Xu Y.  2022.  Brain structure and synaptic protein expression alterations after antidepressant treatment in a Wistar-Kyoto rat model of depression.. Journal of Affective Disorders. 314:293-302.
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S Zipursky L, Kurmangaliyev YZ.  2023.  Brain wiring determinants uncovered by integrating connectomes and transcriptomes.. Current Biology. 33(18):3998-3998.
Peng H, Chung P, Long F, Qu L, Jenett A, Seeds AM, Myers EW, Simpson JH.  2011.  BrainAligner: 3D registration atlases of Drosophila brains.. Nature Methods. 8:493-500.
Yang E, Zwart MF, Rubinov M, James B, Wei Z, Narayan S, Vladimirov N, Mensh BD, Fitzgerald JE, Ahrens MB.  2022.  A brainstem integrator for self-localization and positional homeostasis. Cell. 185(26):5011-5027.e20.
François A, Low SA, Sypek EI, Christensen AJ, Sotoudeh C, Beier KT, Ramakrishnan C, Ritola KD, Sharif-Naeini R, Deisseroth K et al..  2017.  A brainstem-spinal cord inhibitory circuit for mechanical pain modulation by GABA and Enkephalins.. Neuron. 93(4):822-39.
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..  2018.  Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang C-T, Schier AF, Freeman J, Engert F, Ahrens MB.  2016.  Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion.. eLife.
Mohar B, Grimm JB, Patel R, Brown TA, Tillberg P, Lavis LD, Spruston N, Svoboda K.  2022.  Brain-wide measurement of protein turnover with high spatial and temporal resolution. bioRxiv.
Chen S, Liu Y, Wang Z, Colonell J, Liu LD, Hou H, Tien N-W, Wang T, Harris T, Druckmann S et al..  2023.  Brain-wide neural activity underlying memory-guided movement. bioRxiv.
Chen S, Liu Y, Wang ZAiden, Colonell J, Liu LD, Hou H, Tien N-W, Wang T, Harris T, Druckmann S et al..  2024.  Brain-wide neural activity underlying memory-guided movement.. Cell. 187(3):676-691.e16.
Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R.  2012.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.. Nature. 485(7399):471-7.
Chen X, Mu Y, Hu Y, Kuan AT, Nikitchenko M, Randlett O, Chen AB, Gavornik JP, Sompolinsky H, Engert F et al..  2018.  Brain-wide organization of neuronal activity and convergent sensorimotor transformations in larval zebrafish.. Neuron. 100(4):876-890.e5.
Mu Y, Narayan S, Mensh BD, Ahrens MB.  2020.  Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish.. Current Opinion in Neurobiology. 64:151-160.
Xie L, Dong P, Qi Y, Hsieh T-HS, English BP, Jung S, Chen X, De Marzio M, Casellas R, Chang HY et al..  2022.  BRD2 compartmentalizes the accessible genome.. Nature Genetics. 54(4):481-491.
Betzig E, Trautman JK, Harris TD, Weiner JS, Kostelak RL.  1991.  Breaking the diffraction barrier: optical microscopy on a nanometric scale.. Science. 251(5000):1468-70.
Betzig E, Trautman JK, Harris TD, Weiner JS, Kostelak RL.  1991.  Breaking the diffraction barrier: optical microscopy on a nanometric scale. (With commentary). Science. 251(5000):1468-70.
Gao L, R Cooks G, Ouyang Z.  2008.  Breaking the pumping speed barrier in mass spectrometry: discontinuous atmospheric pressure interface.. Analytical Chemistry. 80(11):4026-32.
Si K, Fiolka R, Cui M.  2012.  Breaking the spatial resolution barrier via iterative sound-light interaction in deep tissue microscopy.. Scientific Reports. 2:748.
Schnoes AM, Green NH, Nguyen TA, Vale RD, Goodwin SS, Behrman SL.  2024.  Bridging gaps in traditional research training with iBiology Courses.. PLoS Biology. 22(1):e3002458.
Lippincott-Schwartz J.  2011.  Bridging structure and process in developmental biology through new imaging technologies.. Developmental cell. 21(1):5-10.
Hoeller J, Zhong L, Pachitariu M, Romani S.  2024.  Bridging tuning and invariance with equivariant neuronal representations. bioRxiv.
Zarowny L, Aggarwal A, Rutten VMS, Kolb I, Patel R, Huang H-Y, Chang Y-F, Phan T, Kanyo R, Ahrens MB et al..  2020.  Bright and high-performance genetically encoded Ca indicator based on mNeonGreen fluorescent protein.. ACS Sensors.
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
McKinney SA, Murphy CS, Hazelwood KL, Davidson MW, Looger LL.  2009.  A bright and photostable photoconvertible fluorescent protein.. Nature Methods. 6(2):131-3.