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Crocker J, Ben Noon EPreger-, Stern DL.  2016.  The soft touch: low-affinity transcription factor binding sites in development and evolution.. Current Topics in Developmental Biology.
Preibisch S, Saalfeld S, Schindelin J, Tomancak P.  2010.  Software for bead-based registration of selective plane illumination microscopy data.. Nature Methods. 7(6):418-9.
O’Shaughnessy EC, Stone OJ, LaFosse PK, Azoitei ML, Tsygankov D, Heddleston JM, Legant WR, Wittchen ES, Burridge K, Elston TC et al..  2019.  Software for lattice light-sheet imaging of FRET biosensors, illustrated with a new Rap1 biosensor.. The Journal of Cell Biology. 218(9):3153-3160.
Gaten E, Huston SJ, Dowse HB, Matheson T.  2012.  Solitary and gregarious locusts differ in circadian rhythmicity of a visual output neuron.. Journal of BiologicalRrhythms. 27(3):196-205.
Keller JPearson.  2017.  Solution of the structure of a calmodulin-peptide complex in a novel configuration from a variably twinned data set.. Acta Crystallographica. Section D, Structural Biology. 73(Pt 1):22-31.
Pachitariu M, Sridhar S, Stringer C.  2023.  Solving the spike sorting problem with Kilosort. bioRxiv.
Plaza SM, Markov IL.  2015.  Solving the third-shift problem in ic piracy with test-aware logic locking.. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 34(6):961-71.
Sawtelle S, Narayan L, Ding Y, Kim E, Behrman EL, Lillvis JL, Kawase T, Stern DL.  2024.  Song Torrent: A modular, open-source 96-chamber audio and video recording apparatus with optogenetic activation and inactivation capabilities for Drosophila. bioRxiv.
Arthur BJ, Ding Y, Sosale M, Khalif F, Kim E, Waddell P, Turaga SC, Stern DL.  2021.  SongExplorer: A deep learning workflow for discovery and segmentation of animal acoustic communication signals. bioRxiv.
Yao PJ, Manor U, Petralia RS, Brose RD, T Y Wu R, Ott C, Wang Y-X, Charnoff A, Lippincott-Schwartz J, Mattson MP.  2016.  Sonic Hedgehog Pathway activation increases mitochondrial abundance and activity in hippocampal neurons.. Molecular Biology of the Cell.
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF et al..  2014.  Space-time wiring specificity supports direction selectivity in the retina.. Nature. 509(7500):331-6.
Baker NE, Mlodzik M, Rubin GM.  1990.  Spacing differentiation in the developing Drosophila eye: a fibrinogen-related lateral inhibitor encoded by scabrous.. Science. 250(4986):1370-7.
Betzig E.  2005.  Sparse and composite coherent lattices. (With commentary). Physical Review A. 71:063406.
Lin AC, Bygrave AM, de Calignon A, Lee T, Miesenböck G.  2014.  Sparse, decorrelated odor coding in the mushroom body enhances learned odor discrimination.. Nature Neuroscience. 17(4):559-68.
Koulakov AA, Rinberg D.  2011.  Sparse incomplete representations: a potential role of olfactory granule cells.. Neuron. 72(1):124-36.
Hu T, Chklovskii DB.  2014.  Sparse LMS via online linearized Bregman iteration.. ICASSP 2014 - 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).
Rinberg D, Koulakov A, Gelperin A.  2006.  Sparse odor coding in awake behaving mice.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 26(34):8857-65.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K.  2008.  Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice.. Nature. 451(7174):61-4.
Erwin SR, Sun W, Copeland M, Lindo S, Spruston N, Cembrowski MS.  2020.  A Sparse, Spatially Biased Subtype of Mature Granule Cell Dominates Recruitment in Hippocampal-Associated Behaviors.. Cell Reports. 31(4):107551.
Chang C-L, Weigel AV, Ioannou MS, H Pasolli A, C Xu S, Peale DR, Shtengel G, Freeman M, Hess HF, Blackstone C et al..  2019.  Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III.. Journal of Cell Biology. 218(8):2583-99.
Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH et al..  2012.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.. Genes & Development. 26(1):43-53.
Cembrowski MS, Bachman JL, Wang L, Sugino K, Shields BC, Spruston N.  2016.  Spatial gene-expression gradients underlie prominent heterogeneity of CA1 pyramidal neurons.. Neuron.
Parlakgül G, Pang S, Artico LL, Min N, Cagampan E, Villa R, Goncalves RLS, Lee GYankun, C Xu S, Hotamışlıgil GS et al..  2024.  Spatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity. Nat Commun. 15(1):3982.
Egnor SERoian.  2017.  Spatial Memory: Mice Quickly Learn a Safe Haven.. Current Biology : CB. 27(10):R388-R390.
Dong P, Zhang S, Xie L, Wang L, Lemire AL, Lander AD, Chang HY, Liu ZJ.  2022.  Spatial organization of the 3D genome encodes gene co-expression programs in single cells. bioRxiv.