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D
de Turris V, Nicholson P, Orozco RZamudio, Singer RH, Mühlemann O.  2011.  Cotranscriptional effect of a premature termination codon revealed by live-cell imaging.. RNA. 17(12):2094-107.
De Zitter E, Hugelier S, Duwé S, Vandenberg W, Tebo AG, Van Meervelt L, Dedecker P.  2020.  Integrated structure-function dataset reveals key mechanisms underlying photochromic fluorescent proteins. bioRxiv. :2020.09.25.313528.
De Zitter E, Hugelier S, Duwé S, Vandenberg W, Tebo AG, Van Meervelt L, Dedecker P.  2021.  Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System.. Angew Chemie (International Edition English).
Deaconescu AM, Sevostyanova A, Artsimovitch I, Grigorieff N.  2012.  Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.. Proceedings of the National Academy of Sciences of the United States of America. 109:3353-8.
Deaconescu AM, Artsimovitch I, Grigorieff N.  2012.  Interplay of DNA repair with transcription: from structures to mechanisms.. Trends in Biochemical Sciences. 37(12):543-52.
Deato MDivina E, Marr MT, Sottero T, Inouye C, Hu P, Tjian R.  2008.  MyoD targets TAF3/TRF3 to activate myogenin transcription.. Molecular Cell. 32(1):96-105.
Deato MDivina E, Tjian R.  2007.  Switching of the core transcription machinery during myogenesis.. Genes & Development. 21(17):2137-49.
Deb D, Jiao Z, Chen AB, Broxton M, Ahrens MB, Podgorski K, Turaga SC.  2021.  Programmable 3D snapshot microscopy with Fourier convolutional networks.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Deb D, Jiao Z, Sims RR, Chen ABo-Yuan, Broxton M, Ahrens M, Podgorski K, Turaga SC.  2022.  FourierNets enable the design of highly non-local optical encoders for computational imaging. Advances in Neural Information Processing Systems.
DeBartolo J, Colubri A, Jha AK, Fitzgerald JE, Freed KF, Sosnick TR.  2009.  Mimicking the folding pathway to improve homology-free protein structure prediction.. Proceedings of the National Academy of Sciences of the United States of America. 106(10):3734-9.
Decker M, Jaensch S, Pozniakovsky A, Zinke A, O’Connell KF, Zachariae W, Myers E, Hyman AA.  2011.  Limiting amounts of centrosome material set centrosome size in C.elegans embryos.. Current Biology. 21(15):1259-67.
Deemyad T, Lüthi J, Spruston N.  2018.  Astrocytes integrate and drive action potential firing in inhibitory subnetworks.. Nature Communications. 9(1):4336.
Degnan PH, Leonardo TE, Cass BN, Hurwitz B, Stern D, Gibbs RA, Richards S, Moran NA.  2010.  Dynamics of genome evolution in facultative symbionts of aphids.. Environmental Microbiology. 12(8):2060-9.
Deister CA, Moore AI, Voigts J, Bechek S, Lichtin R, Brown TC, Moore CI.  2024.  Neocortical inhibitory imbalance predicts successful sensory detection.. Cell Rep. 43(7):114233.
Del Arco A, Park J, Moghaddam B.  2020.  Unanticipated stressful and rewarding experiences engage the same prefrontal cortex and ventral tegmental area neuronal populations.. eNeuro.
Del Bene F, Wyart C, Robles E, Tran A, Looger L, Scott EK, Isacoff EY, Baier H.  2010.  Filtering of visual information in the tectum by an identified neural circuit.. Science. 330(6004):669-73.
Del Bonis-O'Donnell JT, Page RH, Beyene AG, Tindall EG, McFarlane IR, Landry MP.  2017.  Dual near-Infrared two-photon microscopy for deep-tissue dopamine nanosensor imaging.. Advanced Functional Materials. 27(39):1702112.
del Val C, Rivas E, Torres-Quesada O, Toro N, Jiménez-Zurdo JI.  2007.  Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics.. Molecular Microbiology. 66(5):1080-91.
Delgado T, Petralia RS, Freeman DW, Sedlacek M, Wang Y-X, Brenowitz SD, Sheu S-H, Gu JW, Kapogiannis D, Mattson MP et al..  2019.  Comparing 3D ultrastructure of presynaptic and postsynaptic mitochondria.. Biology Open. 8(8)
Dell AI, Bender JA, Branson K, Couzin ID, de Polavieja GG, Noldus LPJJ, Pérez-Escudero A, Perona P, Straw AD, Wikelski M et al..  2014.  Automated image-based tracking and its application in ecology.. Trends in Ecology and Evolution. 29(7):417-428.
Dementieva IS, Tereshko V, McCrossan ZA, Solomaha E, Araki D, Xu C, Grigorieff N, Goldstein SAN.  2009.  Pentameric assembly of potassium channel tetramerization domain-containing protein 5.. Journal of Molecular Biology. 387(1):175-91.
Demo G, Rasouly A, Vasilyev N, Svetlov V, Loveland AB, Diaz-Avalos R, Grigorieff N, Nudler E, Korostelev AA.  2017.  Structure of RNA polymerase bound to ribosomal 30S subunit.. eLife. 6
Demo G, Svidritskiy E, Madireddy R, Diaz-Avalos R, Grant T, Grigorieff N, Sousa D, Korostelev AA.  2017.  Mechanism of ribosome rescue by ArfA and RF2.. eLife. 6:e23687.
Deng W, Blobel GA.  2014.  Manipulating nuclear architecture.. Current Opinion in Genetics & Development. 25:1-7.