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Nunez-Iglesias J, Kennedy R, Plaza SM, Chakraborty A, Katz WT.  2014.  Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages. Frontiers in Neuroinformatics. 8:34.
O
O'Brien TC, Mackey ZB, Fetter RD, Choe Y, O'Donoghue AJ, Zhou M, Craik CS, Caffrey CR, McKerrow JH.  2008.  A parasite cysteine protease is key to host protein degradation and iron acquisition.. Journal of Biological Chemistry. 283(43):28934-43.
O'Leary TP, Sullivan KE, Wang L, Clements J, Lemire AL, Cembrowski MS.  2020.  Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala.. eLife. 9
Obara CJ, Nixon-Abell J, Moore AS, Riccio F, Hoffman DP, Shtengel G, C. Xu S, Schaefer K, H. Pasolli A, Masson J-B et al..  2022.  Motion of single molecular tethers reveals dynamic subdomains at ER-mitochondria contact sites. bioRxiv.
Obara CJ, Moore AS, Lippincott-Schwartz J.  2022.  Structural Diversity within the Endoplasmic Reticulum-From the Microscale to the Nanoscale.. Cold Spring Harbor Perspectives in Biology.
Obara CJ, Moore AS, Lippincott-Schwartz J.  2023.  Structural Diversity within the Endoplasmic Reticulum-From the Microscale to the Nanoscale.. Cold Spring Harbor Perspectives in Biology. 15(6)
Obara CJ, Nixon-Abell J, Moore AS, Riccio F, Hoffman DP, Shtengel G, C Xu S, Schaefer K, H Pasolli A, Masson J-B et al..  2024.  Motion of VAPB molecules reveals ER-mitochondria contact site subdomains.. Nature. 626(7997):169-176.
Och FJ, Gildea D, Khudanpur S, Sarkar A, Yamada K, Fraser A, Kumar S, Shen L, Smith D, Eng K et al..  2004.  A smorgasbord of features for statistical machine translation.. Human Language Technology and 5th Meeting of the NAACL.
Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T et al..  2020.  Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.. Science Advances. 6(25):eaaz6699.
Offenhäuser N, Castelletti D, Mapelli L, Soppo BEkalle, Regondi MCristina, Rossi P, D'Angelo E, Frassoni C, Amadeo A, Tocchetti A et al..  2006.  Increased ethanol resistance and consumption in Eps8 knockout mice correlates with altered actin dynamics.. Cell. 127(1):213-26.
Ofstad TA, Zuker CS, Reiser MB.  2011.  Visual place learning in Drosophila melanogaster.. Nature. 474(7350):204-7.
Ohayon S, Avni O, Taylor AL, Perona P, Egnor SERoian.  2013.  Automated multi-day tracking of marked mice for the analysis of social behaviour.. Journal of Neuroscience Methods. 219(1):10-19.
Ohm DT, Bloss EB, Janssen WG, Dietz KC, Wadsworth S, Lou W, Gee NA, Lasley BL, Rapp PR, Morrison JH.  2012.  Clinically relevant hormone treatments fail to induce spinogenesis in prefrontal cortex of aged female rhesus monkeys.. Journal of Neuroscience. 32(34):11700-5.
Ohta M, Zhao Z, Wu D, Wang S, Harrison JL, J. Gómez-Cavazos S, Desai A, Oegema KF.  2021.  Polo-like kinase 1 independently controls microtubule-nucleating capacity and size of the centrosome. Journal of Cell Biology. 220
Ohyama T, Verstreken P, Ly CV, Rosenmund T, Rajan A, Tien A-C, Haueter C, Schulze KL, Bellen HJ.  2007.  Huntingtin-interacting protein 14, a palmitoyl transferase required for exocytosis and targeting of CSP to synaptic vesicles.. The Journal of Cell Biology. 179(7):1481-96.
Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JValdes, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW et al..  2015.  A multilevel multimodal circuit enhances action selection in Drosophila.. Nature. 520(7549):633-9.
Ohyama T, Jovanic T, Denisov G, Dang TC, Hoffmann D, Kerr RA, Zlatic M.  2013.  High-throughput analysis of stimulus-evoked behaviors in Drosophila larva reveals multiple modality-specific escape strategies.. PLoS One. 8(8):e71706.
Okada K, Bartolini F, Deaconescu AM, Moseley JB, Dogic Z, Grigorieff N, Gundersen GG, Goode BL.  2010.  Adenomatous polyposis coli protein nucleates actin assembly and synergizes with the formin mDia1.. The Journal of Cell Biology. 189(7):1087-96.
Okamoto T, Harnett MT, Morikawa H.  2006.  Hyperpolarization-activated cation current (Ih) is an ethanol target in midbrain dopamine neurons of mice.. Journal of Neurophysiology. 95:619-26.
Oldak B, Aguilera-Castrejon A, Hanna JH.  2022.  Recent insights into mammalian natural and synthetic ex utero embryogenesis. Current Opinion in Genetics & Development. 77:101988.
Oldak B, Wildschutz E, Bondarenko V, Comar M-Y, Zhao C, Aguilera-Castrejon A, Tarazi S, Viukov S, Pham TXuan Ai, Ashouokhi S et al..  2023.  Complete human day 14 post-implantation embryo models from naïve ES cells. Nature.
Oldham ML, Grigorieff N, Chen J.  2016.  Structure of the transporter associated with antigen processing trapped by herpes simplex virus.. eLife. 5
Olman V, Peng H, Su Z, Xu Y.  2004.  Mapping of microbial pathways through constrained mapping of orthologous genes.. Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference. :363-70.
Omari S, Makareeva E, Roberts-Pilgrim A, Mirigian L, Jarnik M, Ott C, Lippincott-Schwartz J, Leikin S.  2018.  Noncanonical autophagy at ER exit sites regulates procollagen turnover.. Proceedings of the National Academy of Sciences of the United States of America. 115(43):E10099-108.
Omari S, Makareeva E, Gorrell L, Jarnik M, Lippincott-Schwartz J, Leikin S.  2020.  Mechanisms of procollagen and HSP47 sorting during ER-to-Golgi trafficking. Matrix Biology. 93:79-94.