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Jain V, Turaga SC, Briggman K, Helmstaedter MN, Denk W, Seung H.S.  2011.  Learning to Agglomerate Superpixel Hierarchies. Advances in Neural Information Processing Systems 24 (NIPS 2011). 24
Jain V, Murray JF, Roth F, Turaga S, Zhigulin V, Briggman KL, Helmstaedter MN, Denk W, H Seung S.  2007.  Supervised learning of image restoration with convolutional networks.. IEEE 11th International Conference on Computer Vision. 2:1-8.
Jain V, Seung HSebastian, Turaga SC.  2010.  Machines that learn to segment images: a crucial technology for connectomics.. Current Opinion in Neurobiology. 20(5):653-66.
Jain V, Bollmann B, Richardson M, Berger DR, Helmstaedter MN, Briggman KL, Denk W, Bowden JB, Mendenhall JM, Abraham WC et al..  2010.  Boundary learning by optimization with topological constraints.. IEEE Conference on Computer Vision and Pattern Recognition.
Jain V, Turaga S, Briggman K, Helmstaedter MN, Denk W, Seung S.  2011.  Learning to agglomerate superpixel hierarchies.. Neural Information Processing Systems. 24:648-56.
Jain A, Ulman V, Mukherjee A, Prakash M, Pimpale L, Munster S, Panfilio KA, Jug F, Grill SWA, Tomancak P et al..  2019.  Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation.. Nature Communications. 11(1):5604.
Jain V, H Seung S.  2008.  Natural image denoising with convolutional networks.. Neural Information Processing Systems.
Jain V, Saul LK.  2004.  Exploratory analysis and visualization of speech and music by locally linear embedding.. International Conference on Speech, Acoustics, and Signal Processing. 3:iii-984-7.
Jain V.  2009.  Machine learning of image analysis with convolutional networks and topological constraints..
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S..  2007.  Supervised Learning of Image Restoration with Convolutional Networks. IEEE 11th International Conference on Computer Vision, 2007. ICCV 2007.
Jain V, Zhigulin V, Seung HSebastian.  2005.  Representing part-whole relationships in recurrent neural networks.. Neural Information Processing Systems. 18:563-70.
Jaensch S, Decker M, Hyman AA, Myers EW.  2010.  Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos.. Bioinformatics. 26(12):i13-20.
Jacquet Ade Rus, Tancredi JL, Lemire AL, DeSantis MC, Li W-P, O’Shea EK.  2021.  The LRRK2 G2019S mutation alters astrocyte-to-neuron communication via extracellular vesicles and induces neuron atrophy in a human iPSC-derived model of Parkinson’s disease. eLife.
Jacquet Ade Rus.  2019.  Preparation and co-culture of iPSC-derived dopaminergic neurons and astrocytes.. Current Protocols in Cell Biology. 85(1):e98.
A Jacquet deRus, Alpaugh M, Denis HL, Tancredi JL, Boutin M, Decaestecker J, Beauparlant C, Herrmann L, Saint-Pierre M, Parent M et al..  2023.  The contribution of inflammatory astrocytes to BBB impairments in a brain-chip model of Parkinson's disease.. Nature Communications. 14(1):3651.
Jacobs DS, Allen MC, Park J, Moghaddam B.  2022.  Learning of probabilistic punishment as a model of anxiety produces changes in action but not punisher encoding in the dmPFC and VTA.. eLife. 11
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2024.  Distributed fMRI dynamics predict distinct EEG rhythms across sleep and wakefulness.. bioRxiv.
Jacob V, Petreanu L, Wright N, Svoboda K, Fox K.  2012.  Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex.. Neuron. 73(2):391-404.
Jackson J, Karnani MM, Zemelman BV, Burdakov D, Lee AK.  2018.  Inhibitory control of prefrontal cortex by the claustrum.. Neuron. 99(5):1029-39.
Jackson J, Smith JB, Lee AK.  2020.  The anatomy and physiology of claustrum-cortex interactions.. Annual Review of Neuroscience. 43:231-47.
I
Izeddin I, Récamier V, Bosanac L, Cisse II, Boudarene L, Dugast-Darzacq C, Proux F, Bénichou O, Voituriez R, Bensaude O et al..  2014.  Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.. eLife. :e02230.
Iyer R, Menon V, Buice M, Koch C, Mihalas S.  2013.  The influence of synaptic weight distribution on neuronal population dynamics.. PLoS computational biology. 9(10):e1003248.
Itskov V, Pastalkova E, Mizuseki K, Buzsáki G, Harris KD.  2008.  Theta-mediated dynamics of spatial information in hippocampus.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 28(23):5959-64.
Itskov V, Curto C, Pastalkova E, Buzsáki G.  2011.  Cell assembly sequences arising from spike threshold adaptation keep track of time in the hippocampus.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 31(8):2828-34.
Ito K, Shinomiya K, Ito M, J Armstrong D, Boyan G, Hartenstein V, Harzsch S, Heisenberg M, Homberg U, Jenett A et al..  2014.  A systematic nomenclature for the insect brain.. Neuron. 81:755-65.