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Scheffer LK.  2014.  Lessons from the neurons themselves.. Design Automation Conference (ASP-DAC), 2014 19th Asia and South Pacific. :197-200.
Scheffer LK.  2012.  Design tools for artificial nervous systems.. Design Automation Conference (DAC), 2012 49th ACM/EDAC/IEEE.
Scheffer LK, Meinertzhagen IA.  2019.  The fly brain atlas.. Annual Review of Cell and Developmental Biology. 35:637-53.
Scheffer LK.  2023.  Finding the right type of cell.. eLife. 12
Scheffer LK.  2018.  Insights from Biology: low power circuits in the fruit fly.. International Symposium on Low Power Electronics and Design.
Scheffer L.K, Karsh B, Vitaladevun S..  2013.  Automated alignment of imperfect EM images for neural reconstruction.. arXiv. :arXiv:1304.6034[q-bio.QM].
Scheffer LK.  2018.  Analysis tools for large connectomes.. Frontiers in Neural Circuits. 12:85.
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
Scheffer LK, Meinertzhagen IA.  2021.  A connectome is not enough - what is still needed to understand the brain of Drosophila? The Journal of Experimental Biology. 224(21)
Scheede S, Herpens A, Burmeister F, Oltrogge B, Saenger K, Schmidt-Rose T, Schreiner V, Wenck H, Knieps T, Berlage T.  2011.  Qualification of a new and precise automatic tool for the assessment of hair diameters in phototrichograms.. Skin Research & Technology. 17(2):186-95.
Schaefer K, Xie FLiangqi, Weis-Garcia F, White N.  2020.  A cytometry-based assay to determine optimal Janelia Fluor dye labelling of Halo and SNAP tags.. Journal of Biomolecular Techniques. 31(Suppl):S26.
Sayin S, De Backer J-F, Siju KP, Wosniack ME, Lewis LP, Frisch L-M, Gansen B, Schlegel P, Edmondson-Stait A, Sharifi N et al..  2019.  A Neural Circuit Arbitrates between Persistence and Withdrawal in Hungry Drosophila.. Neuron.
Sayin S, De Backer J-F, Siju KP, Wosniack ME, Lewis LP, Frisch L-M, Gansen B, Schlegel P, Edmondson-Stait A, Sharifi N et al..  2019.  A neural circuit arbitrates between persistence and withdrawal in hungry drosophila.. Neuron. 104(3):544-58.
Sawtelle S, Narayan L, Ding Y, Kim E, Behrman EL, Lillvis JL, Kawase T, Stern DL.  2024.  Song Torrent: A modular, open-source 96-chamber audio and video recording apparatus with optogenetic activation and inactivation capabilities for Drosophila. bioRxiv.
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS.  2016.  Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.. Proceedings of the National Academy of Sciences of the United States of America. 113(40):11232-6.
Saumweber T, Rohwedder A, Schleyer M, Eichler K, Chen Y-chun, Aso Y, Cardona A, Eschbach C, Kobler O, Voigt A et al..  2018.  Functional architecture of reward learning in mushroom body extrinsic neurons of larval Drosophila.. Nature Communications. 9(1):1104.
Sauerbrei BA, Guo J-Z, Cohen JD, Mischiati M, Guo W, Kabra M, Verma N, Mensh B, Branson K, Hantman AW.  2020.  Cortical pattern generation during dexterous movement is input-driven.. Nature. 577(7790):386-91.
Sauerbrei B, Guo J-Z, Mischiati M, Guo W, Kabra M, Verma N, Branson KM, Hantman AW.  2018.  Motor cortex is an input-driven dynamical system controlling dexterous movement.. bioRxiv. :266320.
Satpute-Krishnan P, Ajinkya M, Bhat S, Itakura E, Hegde RS, Lippincott-Schwartz J.  2014.  ER stress-induced clearance of misfolded GPI-anchored proteins via the secretory pathway.. Cell. 158(3):522-33.
Satou C, Friedrich RW.  2021.  Multimodal patterns of inhibitory activity in cerebellar cortex. Neuron. 109:1590-1592.
Satou C, Neve RL, Oyibo HK, Zmarz P, Huang K-H, Bouldoires EArn, Mori T, Higashijima S-I, Keller GB, Friedrich RW.  2022.  A viral toolbox for conditional and transneuronal gene expression in zebrafish. eLife. 11:e77153.
Satou C, Kimura Y, Kohashi T, Horikawa K, Takeda H, Oda Y, Higashijima S-ichi.  2009.  Functional Role of a Specialized Class of Spinal Commissural Inhibitory Neurons during Fast Escapes in Zebrafish. Journal of Neuroscience. 29:6780–6793.
Satou C, Kimura Y, Higashijima S-ichi.  2012.  Generation of Multiple Classes of V0 Neurons in Zebrafish Spinal Cord: Progenitor Heterogeneity and Temporal Control of Neuronal Diversity. Journal of Neuroscience. 32:1771–1783.
Satou C, Kimura Y, Hirata H, Suster ML, Kawakami K, Higashijima S-I.  2013.  Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons. Development. 140:3927-3931.
Satou C, Sugioka T, Uemura Y, Shimazaki T, Zmarz P, Kimura Y, Higashijima S-ichi.  2020.  Functional Diversity of Glycinergic Commissural Inhibitory Neurons in Larval Zebrafish. Cell Reports. 30:3036-3050.e4.