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Main Menu - Block
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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
Journal Article
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.
2018. In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
Buxbaum AR, Haimovich G, Singer RH.
2015. In the right place at the right time: visualizing and understanding mRNA localization.. Nature Reviews Molecular Cell Biology. 16(2):95-109.
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC.
2019. In situ structure of rotavirus VP1 RNA-dependent RNA polymerase.. Journal of Molecular Biology. 431(17):3124-38.
Song K, Shang Z, Fu X, Lou X, Grigorieff N, Nicastro D.
2020. In situ structure determination at nanometer resolution using TYGRESS.. Nature Methods. 17(2):201-08.
Lucas BA, Zhang K, Loerch S, Grigorieff N.
2022. In situ single particle classification reveals distinct 60S maturation intermediates in cells.. eLife.
Nie Z, Li G, Goodwin MP, Gao L, Cyriac J, R Cooks G.
2009. In situ SIMS analysis and reactions of surfaces prepared by soft landing of mass-selected cations and anions using an ion trap mass spectrometer.. Journal of the American Society for Mass Spectrometry. 20(6):949-56.
Cardona A, Fernández J, Solana J, Romero R.
2005. An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression.. Development Genes & Evolution. 215(9):482-88.
Gur D, Bain EJ, Johnson KR, Aman AJ, H Pasoili A, Flynn JD, Allen MC, Deheyn DD, Lee JC, Lippincott-Schwartz J et al..
2020. In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning.. Nature Communications. 11(1):6391.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV et al..
2023. In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes.. Nature Structural & Molecular Biology. 30(3):360-9.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Guo C, Yu Z et al..
2022. In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes. bioRxiv.
S Shuster A, Li J, Chon UR, Sinantha-Hu MC, Luginbuhl DJ, Udeshi ND, Carey DKiki, Takeo YH, Xie Q, Xu C et al..
2022. In situ cell-type-specific cell-surface proteomic profiling in mice.. Neuron.
Chen T-W, Lin B-J, Brunner E, Schild D.
2006. In situ background estimation in quantitative fluorescence imaging.. Biophysical Journal. 90(7):2534-47.
Koulakov A, Kolterman BE, Enikolopov A, Rinberg D.
2011. In search of the structure of human olfactory space.. Frontiers in Systems Neuroscience. 5:65.
Miller JA, Menon V, Goldy J, Kaykas A, Lee C-K, Smith KA, Shen EH, Phillips JW, Lein ES, Hawrylycz MJ.
2014. Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq.. BMC genomics. 15:154.
Kainmueller D, Lamecker H, Seim H, Zachow S, Hege HC.
2010. Improving deformable surface meshes through omni-directional displacements and MRFs.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 13(Pt 1):227-34.
Harris KD, Quiroga RQuian, Freeman J, Smith SL.
2016. Improving data quality in neuronal population recordings.. Nature Neuroscience. 19(9):1165-74.
Aguilera-Castrejon A, Pasantes-Morales H, Montesinos JJose, Cortés-Medina LV, Castro-Manrreza ME, Mayani H, Ramos-Mandujano G.
2017. Improved Proliferative Capacity of NP-Like Cells Derived from Human Mesenchymal Stromal Cells and Neuronal Transdifferentiation by Small Molecules.. Neurochem Res. 42(2):415-427.
Moeyaert B, Holt G, Madangopal R, Perez-Alvarez A, Fearey BC, Trojanowski NF, Ledderose J, Zolnik TA, Das A, Patel D et al..
2018. Improved methods for marking active neuron populations.. Nature Communications. 9(1):4440.
Thirukkumaran OMargaret, Wang C, Asouzu NJoseph, Fron E, Rocha S, Hofkens J, Lavis LD, Mizuno H.
2020. Improved HaloTag Ligand Enables BRET Imaging With NanoLuc. Frontiers in Chemistry. 7
McDonald D, Price MN, Goodrich J, Nawrocki EP, Desantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P.
2012. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.. The ISME Journal. 6(3):610-8.
Qian Y, Cosio DMOrozco, Piatkevich KD, Aufmkolk S, Su W-C, Celiker OT, Schohl A, Murdock MH, Aggarwal A, Chang Y-F et al..
2020. Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging.. PLoS Biology. 18(11):e3000965.
Tebo AG, Pimenta FM, Zhang Y, Gautier A.
2018. Improved Chemical-Genetic Fluorescent Markers for Live Cell Microscopy. Biochemistry. 57:5648–5653.
Im DJiwoong, Prakhya S, Yan J, Turaga SC, Branson K.
2019. Importance Weighted Adversarial Variational Autoencoders for Spike Inference from Calcium Imaging Data. CoRR. abs/1906.03214
Zagha E, Erlich JC, Lee S, Lur G, O'Connor DH, Steinmetz NA, Stringer C, Yang H.
2022. The importance of accounting for movement when relating neuronal activity to sensory and cognitive processes.. Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 42(8):1375-1382.
Attardo A, Fitzgerald JE, Schnitzer MJ.
2015. Impermanence of dendritic spines in live adult CA1 hippocampus.. Nature. 523(7562):592-6.