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Plaza SM, Funke J.  2018.  Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
Plaza SM.  2014.  Focused proofreading: efficiently extracting connectomes from segmented EM images.. arXiv. :arXiv:1409.1199[q-bio.QM].
Plaza SM, Markov IL.  2015.  Solving the third-shift problem in ic piracy with test-aware logic locking.. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 34(6):961-71.
Plaza SM, Clements J, Dolafi T, Umayam L, Neubarth NN, Scheffer LK, Berg S.  2022.  neuPrint: An open access tool for EM connectomics.. Frontiers in Neuroinformatics. 16:896292.
Plaza SM, Scheffer LK, Chklovskii DB.  2014.  Toward large-scale connectome reconstructions.. Current Opinion in Neurobiology. 25C:201-10.
Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W et al..  2016.  Simultaneous denoising, deconvolution, and demixing of calcium imaging data.. Neuron. 89(2):285-99.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Podgorski K, Ranganathan GNattar.  2016.  Brain heating induced by near infrared lasers during multi-photon microscopy.. Journal of Neurophysiology. 116(3):1012-23.
Poeck B, Triphan T, Neuser K, Strauss R.  2008.  Locomotor control by the central complex in Drosophila-an analysis of the tay bridge mutant.. Developmental Neurobiology. 68(8):1046-58.
Pogodalla N, Kranenburg H, Rey S, Rodrigues S, Cardona A, Klämbt C.  2021.  Drosophila ß-Spectrin is required in polarized ensheathing glia that form a diffusion-barrier around the neuropil.. Nature Communications. 12(1):6357.
Polilov AA, Makarova AA, Pang S, C Xu S, Hess H.  2021.  Protocol for preparation of heterogeneous biological samples for 3D electron microscopy: a case study for insects.. Scientific Reports. 11(1):4717.
Ponomarev I, Maiya R, Harnett MT, Schafer GL, Ryabinin AE, Blednov YA, Morikawa H, Boehm SL, Homanics GE, Berman AE et al..  2006.  Transcriptional signatures of cellular plasticity in mice lacking the alpha1 subunit of GABAA receptors.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 26(21):5673-83.
Poort J, Khan AG, Pachitariu M, Nemri A, Orsolic I, Krupic J, Bauza M, Sahani M, Keller GB, Mrsic-Flogel TD et al..  2015.  Learning enhances sensory and multiple non-sensory representations in primary visual cortex.. Neuron. 86(6):1478-90.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J. Bae A, Mitchell E, Mu S, Trautman ET et al..  2022.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. bioRxiv.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.
Port F, Chen H-M, Lee T, Bullock SL.  2014.  Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 111(29):E2967-76.
Porter LL, Kim A, Looger L, Majumdar AK, Starich M.  2022.  Many sequence-diverse domains switch between alpha-helix and beta-sheet folds. Biophysical Journal. 121(3):156a.
Porter LL, Kim AK, Rimal S, Looger LL, Majumdar A, Mensh BD, Starich M.  2022.  Many dissimilar protein domains switch between α-helix and β-sheet folds. Nature Communications. 13(1)
Porter LL, Looger LL.  2018.  Extant fold-switching proteins are widespread.. Proceedings of the National Academy of Sciences of the United States of America. 115(23):5968-73.
Porter LL, Kim AK, Looger LL, Majumdar A, Starich M.  2021.  Pervasive fold switching in a ubiquitous protein superfamily.. bioRxiv.
Portugues R, Severi KE, Wyart C, Ahrens MB.  2013.  Optogenetics in a transparent animal: circuit function in the larval zebrafish.. Current Opinion in Neurobiology. 23(1):119-26.
Potter SS, Brorein WJ, Dunsmuir P, Rubin GM.  1979.  Transposition of elements of the 412, copia and 297 dispersed repeated gene families in Drosophila.. Cell. 17:415-27.
Pouchelon G, Dwivedi D, Bollmann Y, Agba CK, Xu Q, Mirow AMC, Kim S, Qiu Y, Sevier E, Ritola KD et al..  2021.  The organization and development of cortical interneuron presynaptic circuits are area specific.. Cell Reports. 37(6):109993.
Powrie EA, Zenklusen D, Singer RH.  2011.  A nucleoporin, Nup60p, affects the nuclear and cytoplasmic localization of ASH1 mRNA in S. cerevisiae.. RNA. 17(1):134-44.
Prakash K, Baddeley D, Eggeling C, Fiolka R, Heintzmann R, Manley S, Radenovic A, Shroff H, Smith C, Schermelleh L.  2025.  Resolution in super-resolution microscopy - facts, artifacts, technological advancements and biological applications. J Cell Sci. 138(10)