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Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J et al..  2018.  The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion.. Nature Communications. 9(1):2980.
Pacifico R, Dewan A, Cawley D, Guo C, Bozza T.  2012.  An olfactory subsystem that mediates high-sensitivity detection of volatile amines.. Cell Rep. 2(1):76-88.
Pachitariu M, Packer AM, Pettit N, Dalgleish H, Häusser M, Sahani M.  2013.  Extracting regions of interest from biological images with convolutional sparse block coding.. Neural Information Processing Systems (NIPS 2013).
Pachitariu M, Sridhar S, Pennington J, Stringer C.  2024.  Spike sorting with Kilosort4. Nat Methods.
Pachitariu M, Stringer C, Harris KD.  2018.  Robustness of spike deconvolution for neuronal calcium imaging.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(37):7976-85.
Pachitariu M, Sahani M.  2013.  Regularization and nonlinearities for neural language models: when are they needed? arXiv. :arXiv:1301.5650.
Pachitariu M, Sridhar S, Stringer C.  2023.  Solving the spike sorting problem with Kilosort. bioRxiv.
Pachitariu M, Petreska B, Sahani M.  2013.  Recurrent linear models of simultaneously-recorded neural populations.. Neural Information Processing Systems (NIPS 2013).
Pachitariu M, Zhong L, Gracias A, Minisi A, Lopez C, Stringer C.  2025.  A critical initialization for biological neural networks. bioRxiv.
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.  2017.  Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.
Pachitariu M, Steinmetz NA, Kadir SN, Carandini M, Harris KD.  2016.  Fast and accurate spike sorting of high-channel count probes with KiloSort.. Neural Information Processing Systems (NIPS 2016).
Pachitariu M, Stringer C.  2022.  Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
Pachitariu M, Sahani M.  2017.  Visual motion computation in recurrent neural networks.. bioRxiv. :099101.
Pachitariu M, Rariden M, Stringer C.  2025.  Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.
Pachitariu M, Sahani M.  2012.  Learning visual motion in recurrent neural networks.. Neural Information Processing Systems (NIPS 2012).
Pachitariu M, Lyamzin DR, Sahani M, Lesica NA.  2015.  State-dependent population coding in primary auditory cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 35(5):2058-73.
Pachitariu M, Stringer C, Harris KD.  2017.  Robustness of spike deconvolution for calcium imaging of neural spiking.. bioRxiv. :156786.
O
O’Shaughnessy EC, Stone OJ, LaFosse PK, Azoitei ML, Tsygankov D, Heddleston JM, Legant WR, Wittchen ES, Burridge K, Elston TC et al..  2019.  Software for lattice light-sheet imaging of FRET biosensors, illustrated with a new Rap1 biosensor.. The Journal of Cell Biology. 218(9):3153-3160.
O’Neill EM, Rebay I, Tjian R, Rubin GM.  1994.  The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway.. Cell. 78(1):137-47.
O’Leary TP, Kendrick RM, Bristow BN, Sullivan KE, Wang L, Clements J, Lemire AL, Cembrowski MS.  2022.  Neuronal cell types, projections, and spatial organization of the central amygdala. iScience. 25(12):105497.
O’Connor DH, Huber D, Svoboda K.  2009.  Reverse engineering the mouse brain.. Nature. 461:923-9.
O’Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K.  2010.  Vibrissa-based object localization in head-fixed mice.. The Journal of Neuroscience. 30(5):1947-67.
O’Connor DH, S Hires A, Guo ZV, Li N, Yu J, Sun Q-Q, Huber D, Svoboda K.  2013.  Neural coding during active somatosensation revealed using illusory touch.. Nature Neuroscience. 16(7):958-65.
O’Connor DH, Peron SP, Huber D, Svoboda K.  2010.  Neural activity in barrel cortex underlying vibrissa-based object localization in mice.. Neuron. 67(6):1048-61.
Oviedo HV, Bureau I, Svoboda K, Zador AM.  2010.  The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits.. Nature Neuroscience. 13(11):1413-20.