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Kolbe DL, Eddy SR.  2011.  Fast filtering for RNA homology search.. Bioinformatics. 27(22):3102-9.
Kolbe DL, Eddy SR.  2009.  Local RNA structure alignment with incomplete sequence.. Bioinformatics. 25(10):1236-43.
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Kokel D, Dunn TW, Ahrens MB, Alshut R, Cheung CYan J, Saint-Amant L, Bruni G, Mateus R, van Ham TJ, Shiraki T et al..  2013.  Identification of nonvisual photomotor response cells in the vertebrate hindbrain.. The Journal of Neuroscience. 33(9):3834-43.
Kok K, Ay A, Li LM, Arnosti DN.  2015.  Genome-wide errant targeting by Hairy.. eLife. 4
Kohsaka H, Zwart MF, Fushiki A, Fetter RD, Truman JW, Cardona A, Nose A.  2019.  Regulation of forward and backward locomotion through intersegmental feedback circuits in Drosophila larvae.. Nature Communications. 10(1):2654.
Koh THui, Bishop WE, Kawashima T, Jeon BB, Srinivasan R, Kuhlman SJ, Ahrens MB, Chase SM, Yu BM.  2023.  Dimensionality reduction of calcium-imaged neuronal population activity. Nature Computational Science.
Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ et al..  2021.  Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection.. eLife. 10
Koemans TS, Oppitz C, Donders RAT, van Bokhoven H, Schenck A, Keleman K, Kramer JM.  2017.  Drosophila courtship conditioning as a measure of learning and memory.. Journal of Visualized Experiments - Neuroscience . (124):e55808.
Koebke KJ, Yu F, Salerno E, Van Stappen C, Tebo AG, Penner-Hahn JE, Pecoraro VL.  2018.  Modifying the Steric Properties in the Second Coordination Sphere of Designed Peptides Leads to Enhancement of Nitrite Reductase Activity. Angewandte Chemie International Edition. 57:3954–3957.
Koebke KJ, Tebo AG, Manickas EC, Deb A, Penner-Hahn JE, Pecoraro VL.  2021.  Nitrite reductase activity within an antiparallel de novo scaffold.. JBIC Journal of Biological Inorganic Chemistry. 26(7):855-862.
Kobayashi H, Liu Q, Binns TC, Urrutia AA, Davidoff O, Kapitsinou PP, Pfaff AS, Olauson H, Wernerson A, Fogo AB et al..  2016.  Distinct subpopulations of FOXD1 stroma-derived cells regulate renal erythropoietin.. The Journal of Clinical Investigation. 126(5):1926-38.
Koay SAnn, Thiberge SY, Brody CD, Tank DW.  2019.  Neural Correlates of Cognition in Primary Visual versus Neighboring Posterior Cortices during Visual Evidence-Accumulation-based Navigation. bioRxiv.
Koay SAnn, Thiberge SY, Brody CD, Tank DW.  2019.  Sequential and efficient neural-population coding of complex task information. bioRxiv.
Koay SAnn, Tank D, Brody C.  2019.  Neural Correlates of Cognition in Primary Visual versus Downstream Posterior Cortices During Evidence Accumulation. APS March Meeting Abstracts.
Knott G, Marchman H, Wall D, Lich B.  2008.  Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 28(12):2959-64.
Knöpfel T, Lin MZ, Levskaya A, Tian L, Lin JY, Boyden ES.  2010.  Toward the second generation of optogenetic tools.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 30(45):14998-5004.
Knight SC, Xie L, Deng W, Guglielmi B, Witkowsky LB, Bosanac L, Zhang ET, Beheiry MEl, Masson J-B, Dahan M et al..  2015.  Dynamics of CRISPR-Cas9 genome interrogation in living cells.. Science (New York, N.Y.). 350(6262):823-6.
Kner P, Chhun BB, Griffis ER, Winoto L, Gustafsson MGL.  2009.  Super-resolution video microscopy of live cells by structured illumination.. Nature Methods. 6(5):339-42.
Knapp J-M, Chung P, Simpson JH.  2015.  Generating customized transgene landing sites and multi-transgene arrays in Drosophila using phiC31 integrase.. Genetics. 199(4):919-34.
Klomp JE, Shaaya M, Matsche J, Rebiai R, Aaron JS, Collins KB, Huyot V, Gonzalez AM, Muller WA, Chew T-L et al..  2019.  Time-variant SRC kinase activation determines endothelial permeability response.. Cell Chemical Biology. 26(8):1081-94.
Kliethermes CL, Heberlein U.  2011.  Insulin attenuates the acquisition and expression of ethanol-induced locomotor sensitization in DBA/2J mice.. Life Sciences. 89(25-26):968-74.
Klibaite U, Berman GJ, Cande J, Stern DL.  2016.  An unsupervised method for quantifying the behavior of interacting individuals.. Physical Biology. 14(1):1609.09345.
Kler S, Ma M, Narayan S, Ahrens MB, Y Pan A.  2021.  Cre-Dependent Anterograde Transsynaptic Labeling and Functional Imaging in Zebrafish Using VSV With Reduced Cytotoxicity.. Frontiers in Neuroanatomy. 15:758350.
Klement D, Pastalkova E, Fenton AA.  2005.  Tetrodotoxin infusions into the dorsal hippocampus block non-locomotor place recognition.. Hippocampus. 15(4):460-71.