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Main Menu - Block
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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
Journal Article
Eliscovich C, Shenoy SM, Singer RH.
2017. Imaging mRNA and protein interactions within neurons.. Proceedings of the National Academy of Sciences of the United States of America. 114(10):E1875-E1884.
Keller PJ.
2013. Imaging morphogenesis: technological advances and biological insights.. Science. 340(6137):1234168.
Liu Z, Lavis LD, Betzig E.
2015. Imaging live-cell dynamics and structure at the single-molecule level.. Molecular Cell. 58(4):644-59.
Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL.
2011. Imaging light responses of targeted neuron populations in the rodent retina.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 31:2855-67.
Betzig E, Patterson GH, Sougrat R, O Lindwasser W, Olenych S, Bonifacino JS, Davidson MW, Lippincott-Schwartz J, Hess HF.
2006. Imaging intracellular fluorescent proteins at nanometer resolution. (With commentary). Science. 313:1642-5.
Liu T, Peng H, Zhou X.
2009. Imaging informatics for personalised medicine: applications and challenges.. International Journal of Functional Informatics and Personalised Medicine. 2(2):125-35.
Pulver SR, Bayley TG, Taylor AL, Berni J, Bate M, Hedwig B.
2015. Imaging fictive locomotor patterns in larval Drosophila.. Journal of Neurophysiology. 114(5):2564-77.
Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X et al..
2018. Imaging dynamic and selective low-complexity domain interactions that control gene transcription.. Science (New York, N.Y.). 361(6400):eaar2555.
Scott BB, Thiberge SY, Guo C, D Tervo GR, Brody CD, Karpova AY, Tank DW.
2018. Imaging cortical dynamics in GCaMP transgenic rats with a head-mounted widefield macroscope.. Neuron.
Shtengel G, Wang Y, Zhang Z, Goh WIng, Hess HF, Kanchanawong P.
2014. Imaging cellular ultrastructure by PALM, iPALM, and correlative iPALM-EM.. Methods in Cell Biology. 123:273-94.
Hayworth KJ, Morgan JL, Schalek R, Berger DR, Hildebrand DGC, Lichtman JW.
2014. Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits.. Frontiers in Neural Circuits. 8:68.
Reiche MA, Warner DF, Aaron J, Khuon S, Fletcher DA, Hahn K, Rogers KL, Mhlanga M, Koch A, Quaye W et al..
2021. Imaging Africa: a strategic approach to optical microscopy training in Africa.. Nature Methods. 18(8):847-855.
Campbell RAA, Honegger KS, Qin H, Li W, Demir E, Turner GC.
2013. Imaging a population code for odor identity in the Drosophila mushroom body.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 33(25):10568-81.
Preibisch S, Karaiskos N, Rajewsky N.
2021. Image-based representation of massive spatial transcriptomics datasets.. bioRxiv.
Kanfer G, Sarraf SA, Maman Y, Baldwin H, Dominguez-Martin E, Johnson KR, Ward ME, Kampmann M, Lippincott-Schwartz J, Youle RJ.
2021. Image-based pooled whole-genome CRISPRi screening for subcellular phenotypes.. Journal of Cell Biology. 220(2)
Hanslovsky P, Bogovic JA, Saalfeld S.
2016. Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.. Bioinformatics (Oxford, England).
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.
2024. Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.
2024. An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.. Zebrafish.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.
2024. An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae. bioRxiv.
Xie J, Heng P-A, Ho SSM, Shah M.
2006. Image diffusion using saliency bilateral filter.. Medical Image Computing and Computer-Assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 9:67-75.
Aaron JS, Taylor AB, Chew T-L.
2018. Image co-localization - co-occurrence versus correlation.. Journal of Cell Science. 131(3)
Spors H, Albeanu DFlorin, Murthy VN, Rinberg D, Uchida N, Wachowiak M, Friedrich RW.
2012. Illuminating vertebrate olfactory processing.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 32(41):14102-8.
Cembrowski MS, Spruston N.
2016. Illuminating the neuronal architecture underlying context in fear memory.. Cell. 167(4):888-9.
Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M et al..
2019. ilastik: interactive machine learning for (bio)image analysis.. Nature Methods. 16:1226-32.