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Author Title Type [ Year(Desc)]
Filters: Author is Lionnet, Timothée  [Clear All Filters]
2009
Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B et al..  2009.  Imaging transcription in living cells.. Annual Review of Biophysics. 38:173-96.
2011
Gandhi SJ, Zenklusen D, Lionnet T, Singer RH.  2011.  Transcription of functionally related constitutive genes is not coordinated.. Nature Structural & Molecular Biology. 18(1):27-34.
Lionnet T, Czaplinski K, Darzacq X, Shav-Tal Y, Wells AL, Chao JA, Park HYoon, de Turris V, Lopez-Jones M, Singer RH.  2011.  A transgenic mouse for in vivo detection of endogenous labeled mRNA.. Nature Methods. 8(2):165-70.
2012
Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH et al..  2012.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.. Genes & Development. 26(1):43-53.
Lionnet T, Singer RH.  2012.  Transcription goes digital.. EMBO Reports. 13(4):313-21.
2013
Chou Y-ying, Heaton NS, Gao Q, Palese P, Singer RH, Singer R, Lionnet T.  2013.  Colocalization of different influenza viral RNA segments in the cytoplasm before viral budding as shown by single-molecule sensitivity FISH analysis.. PLoS Pathogens. 9(5):e1003358.
Lionnet T.  2013.  Imaging the transcriptome.. Molecular Systems Biology. 9:710.
2014
Chen J, Zhang Z, Li L, Chen B-C, Revyakin A, Hajj B, Legant W, Dahan M, Lionnet T, Betzig E et al..  2014.  Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.. Cell. 156:1274-85.
2015
Deng W, Shi X, Tjian R, Lionnet T, Singer RH.  2015.  CASFISH: CRISPR/Cas9-mediated in situ labeling of genomic loci in fixed cells.. Proceedings of the National Academy of Sciences of the United States of America. 112(38):11870-5.
Kalo A, Kanter I, Shraga A, Sheinberger J, Tzemach H, Kinor N, Singer RH, Lionnet T, Shav-Tal Y.  2015.  Cellular levels of signaling factors are sensed by β-actin alleles to modulate transcriptional pulse intensity.. Cell Reports. 11(3):419-32.
Trcek T, Grosch M, York A, Shroff H, Lionnet T, Lehmann R.  2015.  Drosophila germ granules are structured and contain homotypic mRNA clusters.. Nature Communications. 6:7962.
Grimm JB, English BP, Chen J, Slaughter JP, Zhang Z, Revyakin A, Patel R, Macklin JJ, Normanno D, Singer RH et al..  2015.  A general method to improve fluorophores for live-cell and single-molecule microscopy.. Nature Methods. 12(3):244-50.
Coleman RA, Liu Z, Darzacq X, Tjian R, Singer RH, Lionnet T.  2015.  Imaging transcription: past, present, and future.. Cold Spring Harbor Symposia on Quantitative Biology. 80:1-8.
Halstead JM, Lionnet T, Wilbertz JH, Wippich F, Ephrussi A, Singer RH, Chao JA.  2015.  Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals.. Science. 347(6228):1367-671.
2016
Lavis LD, Grimm JB, English BP, Choi H, Muthusamy AK, Mehl BP, Dong P, Brown TA, Lippincott-Schwartz J, Liu Z et al..  2016.  Bright photoactivatable fluorophores for single-molecule imaging.. Nature Methods. 13(12):985-8.
Katz ZB, English BP, Lionnet T, Yoon YJ, Monnier N, Ovryn B, Bathe M, Singer RH.  2016.  Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes.. eLife. 5
Cho W-K, Jayanth N, English BP, Inoue T, J Andrews O, Conway W, Grimm JB, Spille J-H, Lavis LD, Lionnet T et al..  2016.  RNA Polymerase II cluster dynamics predict mRNA output in living cells.. eLife. 5
2017
Singer RH, Deng W, Lionnet T.  2017.  Genomic probes.. USPTO. A1
Trcek T, Lionnet T, Shroff H, Lehmann R.  2017.  mRNA quantification using single-molecule FISH in Drosophila embryos.. Nature Protocols. 12(7):1326-1348.
Long X, Colonell J, Wong AM, Singer RH, Lionnet T.  2017.  Quantitative mRNA imaging throughout the entire Drosophila brain.. Nature Methods. 14(7):703-6.
Grimm JB, Brown TA, English BP, Lionnet T, Lavis LD.  2017.  Synthesis of Janelia Fluor HaloTag and SNAP-Tag Ligands and Their Use in Cellular Imaging Experiments.. Methods in Molecular Biology (Clifton, N.J.). 1663:179-188.
2019
Sato Y, Hilbert L, Oda H, Wan Y, Heddleston JM, Chew T-L, Zaburdaev V, Keller P, Lionnet T, Vastenhouw N et al..  2019.  Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis.. Development. 146(19)
2020
Ranjan A, Nguyen VQ, Liu S, Wisniewski J, Kim JMin, Tang X, Mizuguchi G, Elalaoui E, Nickels TJ, Jou V et al..  2020.  Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction.. eLife. 9
2021
Kim JMin, Visanpattanasin P, Jou V, Liu S, Tang X, Zheng Q, Li KYu, Snedeker J, Lavis LD, Lionnet T et al..  2021.  Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin.. eLife. 10
Nguyen VQ, Ranjan A, Liu S, Tang X, Ling YHin, Wisniewski J, Mizuguchi G, Li KYu, Jou V, Zheng Q et al..  2021.  Spatiotemporal coordination of transcription preinitiation complex assembly in live cells.. Molecular Cell. 81(17):3560-3575.