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Labs:
            Project Teams:
            - Overview
 - Anatomy and Histology
 - Cryo-Electron Microscopy
 - Electron Microscopy
 - Flow Cytometry
 - Gene Targeting and Transgenics
 - High Performance Computing
 - Immortalized Cell Line Culture
 - Integrative Imaging
 - Invertebrate Shared Resource
 - Janelia Experimental Technology
 - Mass Spectrometry
 - Media Prep
 - Molecular Genomics
 - Primary & iPS Cell Culture
 - Project Pipeline Support
 - Project Technical Resources
 - Quantitative Genomics
 - Scientific Computing
 - Viral Tools
 - Vivarium
 
2006
Huys QJM, Ahrens MB, Paninski L.  
2006.  Efficient estimation of detailed single-neuron models.. Journal of Neurophysiology. 96(2):872-90.
2008
Ahrens MB, Paninski L, Sahani M.  
2008.  Inferring input nonlinearities in neural encoding models.. Network. 19(1):35-67.
2015
2016
Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W et al..  
2016.  Simultaneous denoising, deconvolution, and demixing of calcium imaging data.. Neuron. 89(2):285-99.
2017
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  
2017.  Community-based benchmarking improves spike inference from two-photon calcium imaging data.. PLoS Computational Biology. 14(5):e1006157.
Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L.  
2017.  Multi-scale approaches for high-speed imaging and analysis of large neural populations.. PLoS Computational Biology. 13(8):e1005685.
2018
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  
2018.  Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  
2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
2020
Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N.  
2020.  Rapid mesoscale volumetric imaging of neural activity with synaptic resolution.. Nature Methods. 17(3):291-4.
2021
Xie ME, Adam Y, Fan LZ, Böhm UL, Kinsella I, Zhou D, Rozsa M, Singh A, Svoboda K, Paninski L et al..  
2021.  High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo.. Cell Reports. 35(1):108954.
2023
2025
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  
2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)

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