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Author Title [ Type(Desc)] Year
Journal Article
Liu Z, Yang C-P, Sugino K, Fu C-C, Liu L-Y, Yao X, Lee LP, Lee T.  2015.  Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates.. Science (New York, N.Y.). 350(6258):317-20.
Fortini ME, Rubin GM.  1991.  The optic lobe projection pattern of polarization-sensitive photoreceptor cells in Drosophila melanogaster.. Cell and Tissue Research. 265(1):185-91.
Galiñanes GL, Marchand PJ, Turcotte R, Pellat S, Ji N, Huber D.  2018.  Optical alignment device for two-photon microscopy.. Biomedical Optics Express. 9(8):3624-9.
Kerr R, Lev-Ram V, Baird G, Vincent P, Tsien RY, Schafer WR.  2000.  Optical imaging of calcium transients in neurons and pharyngeal muscle of C. elegans.. Neuron. 26(3):583-94.
Chung I.  2017.  Optical measurement of receptor tyrosine kinase oligomerization on live cells.. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1859(9):1436-44.
Ji N, Shen Y-R.  2004.  Optically active sum frequency generation from molecules with a chiral center: amino acids as model systems.. Journal of the American Chemical Society. 126(46):15008-9.
Varshney LR, Sjöström PJesper, Chklovskii DB.  2006.  Optimal information storage in noisy synapses under resource constraints.. Neuron. 52(3):409-23.
Sindelar CV, Grigorieff N.  2012.  Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter.. Journal of Structural Biology. 180:26-38.
Chklovskii DB.  2000.  Optimal sizes of dendritic and axonal arbors in a topographic projection.. Journal of Neurophysiology. 83(4):2113-19.
Clark DA, Fitzgerald JE.  2024.  Optimization in Visual Motion Estimation.. Annu Rev Vis Sci.
Akerboom J, Chen T-W, Wardill TJ, Marvin JS, Mutlu S, Caldero NCarreras, Esposti F, Borghuis BG, Sun XRichard, Gordus A et al..  2012.  Optimization of a GCaMP calcium indicator for neural activity imaging.. The Journal of Neuroscience. 32:13819-40.
Paez-Segala M, Wang Y, Iyer N, Li W-P, Rivlin P, Looger L.  2020.  Optimization of Fluorescent Proteins and Techniques for In-resin Correlative Light and Electron Microscopy. Microscopy and Microanalysis. 26:1036–1039.
Meissner GW, Grimm JB, Johnston RM, Sutcliffe B, Ng J, Jefferis GSXE, Cachero S, Lavis LD, Malkesman O.  2018.  Optimization of fluorophores for chemical tagging and immunohistochemistry of Drosophila neurons.. PLoS One. 13(8):e0200759.
Port F, Chen H-M, Lee T, Bullock SL.  2014.  Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 111(29):E2967-76.
Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI et al..  2013.  An optimized fluorescent probe for visualizing glutamate neurotransmission.. Nature Methods. 10:162-70.
Thestrup T, Litzlbauer J, Bartholomäus I, Mues M, Russo L, Dana H, Kovalchuk Y, Liang Y, Kalamakis G, Laukat Y et al..  2014.  Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.. Nature Methods. 11(2):175-82.
Grimm JB, Tkachuk AN, Patel R, S. Hennigan T, Gutu A, Dong P, Gandin V, Osowski AM, Holland KL, Liu ZJ et al..  2023.  Optimized Red-Absorbing Dyes for Imaging and Sensing. Journal of the American Chemical Society.
Nern A, Pfeiffer BD, Rubin GM.  2015.  Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system.. Proceedings of the National Academy of Sciences of the United States of America. 112(22):E2967-76.
Benedetti L, Marvin JS, Falahati H, Guillén-Samander A, Looger LL, De Camilli P.  2020.  Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells.. Elife. 9
Romani S, Amit DJ, Amit Y.  2008.  Optimizing one-shot learning with binary synapses.. Neural Computation. 20(8):1928-50.
Priebe C.E, Vogelstein J., Bock D..  2013.  Optimizing the quantity/quality trade-off in connectome inference.. Communications in Statistics-Theory and Methods. 42:3455-62.
Husson SJ, Costa WSteuer, Wabnig S, Stirman JN, Watson JD, W Spencer C, Akerboom J, Looger LL, Treinin M, Miller DM et al..  2012.  Optogenetic analysis of a nociceptor neuron and network reveals ion channels acting downstream of primary sensors.. Current Biology. 22(9):743-52.
Zhang W, Lohman AW, Zhuravlova Y, Lu X, Wiens MD, Hoi H, Yaganoglu S, Mohr MA, Kitova EN, Klassen JS et al..  2017.  Optogenetic control with a photocleavable protein, PhoCl.. Nature Methods. 14(4):391-394.
Cande J, Namiki S, Qiu J, Korff W, Card GM, Shaevitz JW, Stern DL, Berman GJ.  2018.  Optogenetic dissection of descending behavioral control in Drosophila.. eLife. :e34275.
Benedetti L.  2021.  Optogenetic Tools for Manipulating Protein Subcellular Localization and Intracellular Signaling at Organelle Contact Sites. Current Protocols. 1(3)