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Stringer C, Pachitariu M.  2024.  Cellpose3: one-click image restoration for improved cellular segmentation.. bioRxiv.
Stringer C, Michaelos M, Pachitariu M.  2020.  Cellpose: a generalist algorithm for cellular segmentation. bioRxiv.
Stringer C, Wang T, Michaelos M, Pachitariu M.  2021.  Cellpose: a generalist algorithm for cellular segmentation.. Nature Methods. 18(1):100-106.
Pachitariu M, Stringer C.  2022.  Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
Guo M, Pegoraro AF, Mao A, Zhou EH, Arany PR, Han Y, Burnette DT, Jensen MH, Kasza KE, Moore JR et al..  2017.  Cell volume change through water efflux impacts cell stiffness and stem cell fate.. Proceedings of the National Academy of Sciences of the United States of America. 114(41):E8618-27.
Hooks BM, Papale AE, Paletzki R, Feroze M, Eastwood BS, Couey JJ, Winnubst J, Chandrashekar J, Gerfen CR.  2018.  Cell type-specific variation of somatotopic precision across corticostriatal projections. . bioRxiv.
Henry FE, Sugino K, Tozer A, Branco T, Sternson SM.  2015.  Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss.. eLife. 4
Lin B-J, Chen T-W, Schild D.  2007.  Cell type-specific relationships between spiking and [Ca2+]i in neurons of the Xenopus tadpole olfactory bulb.. The Journal of Physiology. 582(Pt 1):163-75.
Yang Y, Lee P, Sternson SM.  2015.  Cell type-specific pharmacology of NMDA receptors using masked MK801.. eLife. 4
Henry GL, Davis FP, Picard S, Eddy SR.  2012.  Cell type-specific genomics of Drosophila neurons.. Nucleic Acids Research. 40(19):9691-704.
Chiu H, Robie AA, Branson KM, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2023.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. bioRxiv.
Shwartz Y, Gonzalez-Celeiro M, Chen C-L, H Pasolli A, Sheu S-H, Fan SMai-Yi, Shamsi F, Assaad S, Lin ETai-Yu, Zhang B et al..  2020.  Cell types promoting goosebumps form a niche to regulate hair follicle stem cells.. Cell. 182(3):578.
Schretter CE, Aso Y, Robie AA, Dreher M, Dolan M-J, Chen N, Ito M, Yang T, Parekh R, Branson KM et al..  2020.  Cell types and neuronal circuitry underlying female aggression in Drosophila.. eLife. 9
Martín-Peña A, Acebes A, Rodríguez J-R, Chevalier V, Casas-Tinto S, Triphan T, Strauss R, Ferrús A.  2014.  Cell types and coincident synapses in the ellipsoid body of Drosophila.. The European Journal of Neuroscience. 39(10):1586-601.
Dye NA, Popović M, Spannl S, Etournay R, Kainmüller D, Ghosh S, Myers EW, Jülicher F, Eaton S.  2017.  Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc.. Development (Cambridge, England). 144(23):4406-4421.
Chareyre S, Li X, Anjuwon-Foster BR, Updegrove TB, Clifford S, Brogan AP, Su Y, Zhang L, Chen J, Shroff H et al..  2024.  Cell division machinery drives cell-specific gene activation during differentiation in .. Proc Natl Acad Sci U S A. 121(13):e2400584121.
Ren Q, Awasaki T, Huang Y-F, Liu Z, Lee T.  2016.  Cell class-lineage analysis reveals sexually dimorphic lineage compositions in the Drosophila brain.. Current Biology : CB. 26(19):2583-93.
Rambold AS, Lippincott-Schwartz J.  2011.  Cell biology. SevERing mitochondria.. Science (New York, N.Y.). 334(6053):186-7.
Lorsch JR, Collins FS, Lippincott-Schwartz J.  2014.  Cell Biology. Fixing problems with cell lines.. Science (New York, N.Y.). 346(6216):1452-3.
Itskov V, Curto C, Pastalkova E, Buzsáki G.  2011.  Cell assembly sequences arising from spike threshold adaptation keep track of time in the hippocampus.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 31(8):2828-34.
Benton MA, Akam M, Pavlopoulos A.  2013.  Cell and tissue dynamics during Tribolium embryogenesis revealed by versatile fluorescence labeling approaches.. Development. 140(15):3210-20.
Dennis PP, Tripp V, Lui L, Lowe T, Randau L.  2015.  C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules.. BMC Genomics. 16(1):632.
Bharadwaj R, Roy M, Ohyama T, Sivan-Loukianova E, Delannoy M, Lloyd TE, Zlatic M, Eberl DF, Kolodkin AL.  2013.  Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila.. Development. 140:627-38.
Grimm JB, Lavis LD.  2022.  Caveat fluorophore: an insiders' guide to small-molecule fluorescent labels.. Nature Methods. 19(2):149-58.
Saalfeld S, Cardona A, Hartenstein V, Tomancak P.  2009.  CATMAID: collaborative annotation toolkit for massive amounts of image data.. Bioinformatics. 25(15):1984-6.