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Author Title [ Type(Desc)] Year
Journal Article
Finn RD, Clements J, Eddy SR.  2011.  HMMER web server: interactive sequence similarity searching.. Nucleic Acids Research. 39:W29-37.
Kimmel BE, Heberlein U, Rubin GM.  1990.  The homeo domain protein rough is expressed in a subset of cells in the developing Drosophila eye where it can specify photoreceptor cell subtype.. Genes & Development. 4(5):712-27.
Xu C, Ramos TB, Rogers EM, Reiser MB, Doe CQ.  2024.  Homeodomain proteins hierarchically specify neuronal diversity and synaptic connectivity. eLife.
Johnson RE, Tien N-W, Shen N, Pearson JT, Soto F, Kerschensteiner D.  2017.  Homeostatic plasticity shapes the visual system’s first synapse. Nature Communications. 8(1)
Eddy SR.  2015.  Homology searches for structural RNAs: from proof of principle to practical use.. RNA. 21(4):605-7.
Riddiford LM.  1976.  Hormonal control of insect epidermal cell commitment in vitro.. Nature. 259(5539):115-7.
Zhou B, Riddiford LM.  2001.  Hormonal regulation and patterning of the broad-complex in the epidermis and wing discs of the tobacco hornworm, Manduca sexta.. Developmental Biology. 231(1):125-37.
Lai Y-W, Miyares RL, Liu L-Y, Chu S-Y, Lee T, Yu H-H.  2022.  Hormone-controlled changes in the differentiation state of post-mitotic neurons.. Current Biology. 32(10):2341-2348.
Yi B, Tanaka YL, Kosako H, Butlertanaka EP, Sengupta P, Lippincott-Schwartz J, Saito A, Yoshimura SH.  2024.  Host ZCCHC3 blocks HIV-1 infection and production by a dual mechanism. iScience.
Zouinkhi M, Rhoades JL, Weigel AV.  2024.  Hot-Distance: Combining One-Hot and Signed Distance Embeddings for Segmentation. arXiv. :2406.17936.
Orgogozo V, Stern DL.  2009.  How different are recently diverged species?: more than 150 phenotypic differences have been reported for the D. melanogaster species subgroup. Fly. 3(2):117.
Riddiford LM.  2012.  How does juvenile hormone control insect metamorphosis and reproduction? General and Comparative Endocrinology. 179(3):477-84.
Boffi NM, Guo Y, Rycroft CH, Amir A.  2024.  How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution. eLife.
Hou K, Ge P, Sawaya MR, Dolinsky JL, Yang Y, Jiang YXiao, Lutter L, Boyer DR, Cheng X, Pi J et al..  2024.  How short peptides can disassemble ultra-stable tau fibrils extracted from Alzheimer’s disease brain by a strain-relief mechanism. bioRxiv.
Snapp ELee.  2019.  How to design a chalk talk-the million dollar sales pitch. Molecular Biology of the Cell. 30(13):1575-1577.
Koulakov AA, Rinberg DA, Tsigankov DN.  2005.  How to find decision makers in neural networks.. Biological Cybernetics. 93(6):447-62.
Keller PJ.  2017.  How to make a worm twitch.. Biophysical Journal. 112(9):1737-1738.
Stern DL.  2003.  The Hox gene Ultrabithorax modulates the shape and size of the third leg of Drosophila by influencing diverse mechanisms.. Dev Biol. 256(2):355-66.
Pavlopoulos A, Akam M.  2011.  Hox gene Ultrabithorax regulates distinct sets of target genes at successive stages of Drosophila haltere morphogenesis.. Proceedings of the National Academy of Sciences of the United States of America. 108:2855-60.
Pavlopoulos A, Akam M.  2007.  Hox go omics: insights from Drosophila into Hox gene targets.. Genome Biology. 8(3):208.
Pielage J, Bulat V, J Zuchero B, Fetter RD, Davis GW.  2011.  Hts/Adducin controls synaptic elaboration and elimination.. Neuron. 69(6):1114-31.
Christenson MP, Diez ASanz, Heath SL, Saavedra-Weisenhaus M, Adachi A, Nern A, Abbott LF, Behnia R.  2024.  Hue selectivity from recurrent circuitry in Drosophila. Nat Neurosci.
Näär AM, Taatjes DJ, Zhai W, Nogales E, Tjian R.  2002.  Human CRSP interacts with RNA polymerase II CTD and adopts a specific CTD-bound conformation.. Genes & Development. 16(11):1339-44.
Parisi MA, Xu B, Clayton DA.  1993.  A human mitochondrial transcriptional activator can functionally replace a yeast mitochondrial HMG-box protein both in vivo and in vitro.. Molecular and Cellular Biology. 13(3):1951-61.
Viukov S, Shani T, Bayerl J, Aguilera-Castrejon A, Oldak B, Sheban D, Tarazi S, Stelzer Y, Hanna JH, Novershtern N.  2022.  Human primed and naïve PSCs are both able to differentiate into trophoblast stem cells.. Stem Cell Reports. 17(11):2484-2500.