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Yao J, Tjian R.  2011.  Sub-nuclear compartmentalization of core promoter factors and target genes.. Cell Cycle. 10(15):2405-6.
Yao J, Fetter RD, Hu P, Betzig E, Tjian R.  2011.  Subnuclear segregation of genes and core promoter factors in myogenesis. (With commentary). Genes & Development. 25(6):569-80.
Liu C, Placais P-Y, Yamagata N, Pfeiffer BD, Aso Y, Friedrich AB, Siwanowicz I, Rubin GM, Preat T, Tanimoto H.  2012.  A subset of dopamine neurons signals reward for odour memory in Drosophila.. Nature. 488(7412):512-6.
Albin SD, Kaun KR, Knapp J-M, Chung P, Heberlein U, Simpson JH.  2015.  A subset of serotonergic neurons evokes hunger in adult Drosophila.. Current Biology : CB. 25(18):2435-40.
Amat F, Comolli LR, Moussavi F, Smit J, Downing KH, Horowitz M.  2010.  Subtomogram alignment by adaptive Fourier coefficient thresholding.. Journal of Structural Biology. 171(3):332-44.
Wolf M, Garcea RL, Grigorieff N, Harrison SC.  2010.  Subunit interactions in bovine papillomavirus.. Proceedings of the National Academy of Sciences of the United States of America. 107:6298-303.
Manber U, Myers E.  1993.  Suffix arrays: a new method for on-line string searches.. SIAM Journal on Scientific Computing: A Publication of the Society for Industrial and Applied Mathematics. 22:935-48.
Iadanza MG, Gonen T.  2014.  A suite of software for processing MicroED data of extremely small protein crystals.. Journal of Applied Crystallography. 47(Pt 3):1140-45.
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.  2017.  Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.
Ji N, Shen Y-R.  2004.  Sum frequency vibrational spectroscopy of leucine molecules adsorbed at air-water interface.. The Journal of Chemical Physics. 120(15):7107-12.
Ji N.  2002.  Sum-frequency spectroscopy of electronic resonances on a chiral surface monolayer of bi-naphthol.. Physical Review B. 66:165415.
Ji N.  2003.  Sum-frequency vibrational spectroscopic study of surface glass transition of poly(vinyl alcohol).. Macromolecules. 36:3303.
Sheban D, Shani T, Maor R, Aguilera-Castrejon A, Mor N, Oldak B, Shmueli MD, Eisenberg-Lerner A, Bayerl J, Hebert J et al..  2022.  SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity. Molecular Cell. 82:106-122.e9.
Zhu JJufen, Parteka Z, Lee B, Szalaj P, Wang P, Jodkowska K, Aaron J, Chew T-L, Plewczynski D, Ruan Y.  2019.  Super resolution imaging of a distinct chromatin loop in human lymphoblastoid cells.. bioRxiv.
Tang J, Germain RN, Cui M.  2012.  Superpenetration optical microscopy by iterative multiphoton adaptive compensation technique.. Proceedings of the National Academy of Sciences of the United States of America. 109(22):8434-9.
Shao L, Kner P, E Rego H, Gustafsson MGL.  2011.  Super-resolution 3D microscopy of live whole cells using structured illumination.. Nature Methods. 8:1044-6.
Stubb A, Guzmán C, Närvä E, Aaron J, Chew T-L, Saari M, Miihkinen M, Jacquemet G, Ivaska J.  2019.  Superresolution architecture of cornerstone focal adhesions in human pluripotent stem cells.. Nature Communications. 10(1):4756.
Stubb A, Guzmán C, Närvä E, Aaron J, Chew T-L, Saari M, Miihkinen M, Jacquemet G, Ivaska J.  2018.  Superresolution architecture of pluripotency guarding adhesions.. bioRxiv.
Brown TA, Tkachuk AN, Shtengel G, Kopek BG, Bogenhagen DF, Hess HF, Clayton DA.  2011.  Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction.. Molecular and Cellular Biology. 31:4994-5010.
Chen Y-C, Sood C, Marin M, Aaron J, Gratton E, Salaita K, Melikyan GB.  2020.  Super-Resolution Fluorescence Imaging Reveals That Serine Incorporator Protein 5 Inhibits Human Immunodeficiency Virus Fusion by Disrupting Envelope Glycoprotein Clusters.. ACS Nano.
Sengupta P, Van Engelenburg SB, Lippincott-Schwartz J.  2014.  Superresolution imaging of biological systems using photoactivated localization microscopy.. Chemical reviews. 114(6):3189-202.
Frazzette N, Cruz AC, Wu X, Hammer JA, Lippincott-Schwartz J, Siegel RM, Sengupta P.  2022.  Super-Resolution Imaging of Fas/CD95 Reorganization Induced by Membrane-Bound Fas Ligand Reveals Nanoscale Clustering Upstream of FADD Recruitment.. Cells. 11(12)
Xia P, Liu X, Wu B, Zhang S, Song X, Yao PY, Lippincott-Schwartz J, Yao X.  2014.  Superresolution imaging reveals structural features of EB1 in microtubule plus-end tracking.. Molecular biology of the cell. 25(25):4166-73.
Patterson G, Davidson M, Manley S, Lippincott-Schwartz J.  2010.  Superresolution imaging using single-molecule localization.. Annual review of physical chemistry. 61:345-67.
Millis BA, Burnette DT, Lippincott-Schwartz J, Kachar B.  2013.  Superresolution imaging with standard fluorescent probes.. Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.]. 60:Unit21.8..